Protein Alignment Hmg20a and Dsp1

DIOPT Version :9

• Sequence 1: XP_006243179.1
• Gene: Hmg20a / 315689
• RGDID: 1564760
• Length: 350
• Species: Rattus norvegicus
• Sequence 2: NP_001138203.1
• Gene: Dsp1 / 117294
• FlyBaseID: FBgn0278608
• Length: 397
• Species: Drosophila melanogaster
• Alignment Length: 147
• Identity: 51/147 - (34%)
• Similarity: 78/147 - (53%)
• Gaps: 10/147 - (6%)

  Rat    72 AEGSEQRPEDEQRS----KRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVP 132
            ||..:||.|.|.::    |.....:|:|||: ::|.||||..|:.:..|.|:.|.:::|..||..
  Fly   238 AEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQ-IKDPNAPKRSLSAFFWFCNDERNKVKALNPEFG 301

  Rat   133 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS----RKTQDRQKGK 193
            ..:|.:.||.:||.:.||.||:|...|:|||.||.:|:.:| ||......|    :.:...|..|
  Fly   302 VGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEY-KTSGKIAMSAPSMQASMQAQAQK 365

  Rat   194 SHRQDAARQATHDHEKE 210
            :....||.|..|...:|
  Fly   366 AALLAAAAQQQHQQLEE 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hmg20a	XP_006243179.1	HMGB-UBF_HMG-box	106..171	CDD:238686	26/64 (41%)
Dsp1	NP_001138203.1	HMG-box	182..252	CDD:294061	6/13 (46%)
		HMGB-UBF_HMG-box	275..339	CDD:238686	25/63 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810