DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mldr and PRORP1

DIOPT Version :9

Sequence 1:NP_001245549.1 Gene:mldr / 31568 FlyBaseID:FBgn0029858 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001324632.1 Gene:PRORP1 / 817782 AraportID:AT2G32230 Length:572 Species:Arabidopsis thaliana


Alignment Length:623 Identity:130/623 - (20%)
Similarity:221/623 - (35%) Gaps:193/623 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 LPADRLDQLRSDLFERRHELSGAEWTEVRR-SLVDGYKHINGHNVDAVILGVCSAPNQLSLAK-- 96
            :|:..|...|...|...|.....:.|..|| .||:..:|:            |:.|  |:.||  
plant    25 VPSVHLHHPRFSPFRFYHTSLLVKGTRDRRLILVERSRHL------------CTLP--LAAAKQS 75

  Fly    97 --SYVEFLRSRGSK------PNAATLGRL------------LRVYNAAYHER-PLSEAEQSEILQ 140
              |..|.|..:..|      |.|....:|            ||:|:.|.... .||:...:.:|.
plant    76 AASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY 140

  Fly   141 ICRSLQAEHETLDASSCENVIHGLVATSGDDWQRGLPLLEMMKVTS-TPSVAAYSALAEKAFSVA 204
            :|...:|..|               ::......||..:.:.|.|.. .|:.|.::..|..|  ||
plant   141 VCSLAEAATE---------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA--VA 188

  Fly   205 TPEQELAWRLLEEMATARKPPKCEVYLALL---------------------NRLANETAQLPAQL 248
            ..:.|:|:.::::|......|:...|...|                     :.:..|..:|.|.|
plant   189 KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 253

  Fly   249 SLLLQFLERHEILVSQRVAIRLQELSSQVPQL------------LHTRT---------------- 285
            .:.:......::   .:...||::|..||.:.            :.|:|                
plant   254 KVSMDTKNADKV---YKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVS 315

  Fly   286 --------------------THLGGLGKCQSCQQHLQPVAISDEEFRQLSECF---LERVLIRRD 327
                                |.:...|.|:.|::.|..:.|:..|    :|.|   |.|:...|:
plant   316 GGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVE----TETFAASLTRLACERE 376

  Fly   328 VFQRSTPEEVARFKKFVEKTAPYDCVIDGLNV------AYS----TGTKKTPQQL--AKLVATVV 380
            |     .....:|::::|:..|:|.||||.|:      ::|    ..|.:..||:  :|.:..|:
plant   377 V-----KANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVI 436

  Fly   381 RHFREQDKRV------LVLGREHMRNWSKQAMHYVHCNASLFLTSNLSHDDPFLLYATLRSGQET 439
            .|    ..||      ....|..:..| |.|       .:|:.|...|:||.:.|||.:..  :.
plant   437 LH----KSRVNGGPATYPKNRALLEKW-KNA-------GALYATPPGSNDDWYWLYAAVSC--KC 487

  Fly   440 DFFSRDLMRSHAFH-LGTELKPIFRRWQQEHQFSLVTQTQTGQIIVKEPVRHRLCAHQVAD-TWH 502
            ...:.|.||.|.|. ||..   .|.||:::||..:....:.| :.:..|..:.:...:..| |||
plant   488 LLVTNDEMRDHLFQLLGNS---FFPRWKEKHQVRISVTREDG-LKLNMPPPYSIVIQESEDGTWH 548

  Fly   503 VPYCAQYTPHPTDSFEVPANWLCIQMKEQTIPATKTKT 540
            ||...:      |..:....|||         |.::||
plant   549 VPMSVE------DDLQTSRQWLC---------AKRSKT 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mldrNP_001245549.1 PRORP 288..525 CDD:293558 64/259 (25%)
PRORP1NP_001324632.1 PPR_long 87..296 CDD:407303 39/228 (17%)
PPR repeat 104..126 CDD:276811 5/21 (24%)
PPR repeat 134..170 CDD:276811 7/50 (14%)
PPR repeat 176..205 CDD:276811 8/30 (27%)
PPR repeat 211..237 CDD:276811 2/25 (8%)
PRORP 338..565 CDD:407171 64/259 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 59 1.000 Domainoid score I3890
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1247650at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13547
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

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