DRSC/TRiP Functional Genomics Resources

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Protein Alignment mldr and Prorp

DIOPT Version :9

Sequence 1:NP_001245549.1 Gene:mldr / 31568 FlyBaseID:FBgn0029858 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001100200.1 Gene:Prorp / 299050 RGDID:1305089 Length:587 Species:Rattus norvegicus


Alignment Length:527 Identity:147/527 - (27%)
Similarity:251/527 - (47%) Gaps:44/527 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGHAHPRWLASQHKRRPQPGSLPADRLDQLRSDLFERRHELSGAEWTEVRRSLVDGYKHINGHNV 78
            ||.|..|...|.:.:. |..:||.....||.:      ..|:..||.:::    :.:|. .....
  Rat    89 AGEAKKRSHLSGNPQN-QGHTLPVKSTVQLPT------KPLNSEEWDKLK----EDFKG-KASFE 141

  Fly    79 DAVILGVCSAPNQLSLAKSYVEFLRSRGSKPNAATLGRLLRV---YNAAYHERPLSEAEQSEILQ 140
            |.||..:..:.:.:.:|||.:.::.::    |...:|..|.|   |...:|:      :.||::.
  Rat   142 DFVISQMTRSCSSVDVAKSLLAWVAAK----NNGIVGYNLLVKYLYLCVFHK------QTSEVID 196

  Fly   141 ICRSLQAEHETLDASSCENVIHGLVATSGDDWQRGLPLLEMMKVTSTPSVAAYSALAEKAFSVAT 205
            :...::|::::|::.....:|.||:  ..|.|:..|.|||.:|....||...|....:.|  :..
  Rat   197 VYEIMKAKYKSLESGGYTLLIRGLI--HSDRWREALLLLEDIKKVMVPSKKNYGDCIQGA--LLH 257

  Fly   206 PEQELAWRLLEEMATARKPPKCEVYLALLN--RLANETAQLPAQLSLLLQFLERHEILVSQRVAI 268
            .:..:||.|.:|:......|..|...|..:  :..|:. |...||..:|.:|..:::...:..|.
  Rat   258 QDVNVAWSLYQELVGHNLIPLLETLKAFFDHGKDMNDD-QYSNQLLDILLYLRNNQLYPGESFAH 321

  Fly   269 RLQELSSQVP-QLLHTRTTHLGGLGKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRS 332
            .::.....:| :....:.|.:...|:|.||.:.::.:.:|.||:..|.|..:..|:...|.::::
  Rat   322 SIKTWFESIPGRQWKGQFTTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKT 386

  Fly   333 TPEEVARFKKFVEKTAPYDCVIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREH 397
            ||:|:.||::||:...|:|.||||||||......:..|.|..:|:.:.    :|:.::|||||:|
  Rat   387 TPQELKRFERFVKSCPPFDIVIDGLNVAKMFPKGRESQNLLGIVSQLA----QQNLQLLVLGRKH 447

  Fly   398 M----RNWSKQAMHYVHCNASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFHL-GTE 457
            |    ..|.|..|..|...|..|...|:|.||||||||||.||....|.::||:|.|...| ...
  Rat   448 MLRPSSQWRKDEMEQVRKQAHCFFADNISEDDPFLLYATLNSGSHCKFITKDLLRDHKACLPDAR 512

  Fly   458 LKPIFRRWQQEHQFSLVTQTQTGQIIVKEPVRHRLCAHQVADTWHVPYCAQYTPHPTDSFEVPAN 522
            .:.:|.:|||.||.::.......::..:..:.:........||||:||.....|.  .|.|||..
  Rat   513 AQRLFFKWQQGHQLAITKGFLKSKLTFQHILSYDTVVQTTGDTWHIPYDEDLVPR--SSCEVPTK 575

  Fly   523 WLCIQMK 529
            |||:|.|
  Rat   576 WLCLQRK 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mldrNP_001245549.1 PRORP 288..525 CDD:293558 83/241 (34%)
ProrpNP_001100200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 94..114 5/20 (25%)
PPR repeat 174..204 CDD:276811 7/35 (20%)
PPR repeat 210..239 CDD:276811 10/30 (33%)
PPR repeat 244..271 CDD:276811 6/28 (21%)
PRORP 342..578 CDD:293558 83/241 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335288
Domainoid 1 1.000 159 1.000 Domainoid score I4004
eggNOG 1 0.900 - - E1_28J82
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H45935
Inparanoid 1 1.050 193 1.000 Inparanoid score I3770
OMA 1 1.010 - - QHG47571
OrthoDB 1 1.010 - - D1247650at2759
OrthoFinder 1 1.000 - - FOG0007821
OrthoInspector 1 1.000 - - oto98911
orthoMCL 1 0.900 - - OOG6_107723
Panther 1 1.100 - - LDO PTHR13547
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5770
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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