DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt4 and RPT5A

DIOPT Version :10

Sequence 1:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_187204.1 Gene:RPT5A / 819718 AraportID:AT3G05530 Length:424 Species:Arabidopsis thaliana


Alignment Length:412 Identity:177/412 - (42%)
Similarity:249/412 - (60%) Gaps:39/412 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ATPMPDNLRVKALSEYRKKL-LEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEV 68
            ||.:.|| .::.|.|..::. ||....:.::||.:|:|| |.|       .|..|  ||.|| |:
plant    28 ATRLLDN-EIRILKEDAQRTNLECDSYKEKIKENQEKIK-LNK-------QLPYL--VGNIV-EI 80

  Fly    69 LKQLTED-----------------KFIVKATNGPRY----VVGCRRQLDKAKLKSGTRVALDMTT 112
            |:...||                 |.:|..|:..:.    |||.   :|...||.|..|.::..:
plant    81 LEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDS 142

  Fly   113 LTIMRYLPREVDPLVYNMSHEDPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKG 177
            ..|:..||.|.|..|..|..::.....|:.||||..||:||.|.|.||:.:.|.|.::|:.||||
plant   143 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKG 207

  Fly   178 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDE 242
            .||||||||||||:|||.|:|.:|.|||:....:|..:||:.|:|:|:.|..|::..|||||:||
plant   208 VLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDE 272

  Fly   243 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKI 307
            |||||.:||....|.|||:|||::|||||:|||.|..::|:|.||||.|.|||||:|.|||||||
plant   273 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKI 337

  Fly   308 EIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQ 372
            |.|.|.|:||..||:||:.|:..|.::::|.:.:.:|:||||.|:.||.|||:.|:|.:...|..
plant   338 EFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNH 402

  Fly   373 EDFMKAVRKVSDNKKLESKLDY 394
            |||.:.:.:|...||  :.|:|
plant   403 EDFNEGIIQVQAKKK--ASLNY 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4NP_572308.3 PRK03992 13..387 CDD:179699 169/395 (43%)
RPT5ANP_187204.1 PRK03992 32..417 CDD:179699 171/399 (43%)

Return to query results.
Submit another query.