DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt4 and RPT2b

DIOPT Version :9

Sequence 1:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_179604.1 Gene:RPT2b / 816533 AraportID:AT2G20140 Length:443 Species:Arabidopsis thaliana


Alignment Length:388 Identity:174/388 - (44%)
Similarity:247/388 - (63%) Gaps:11/388 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TATPMPD-NLRVKALSEYRKKLLEHKEI---EGRLKEKREEIKDLTKLYDKSENDLKALQSVGQI 64
            |.||... .||:..|...:..||..:|.   :.|||.:.|:.::     |:|:.|  .|:.....
plant    54 TVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEE-----DRSKVD--DLRGTPMS 111

  Fly    65 VGEVLKQLTEDKFIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYN 129
            ||.:.:.:.|:..||.::.||.|.||....:||.:|:.|..:.:....|:::..|..||||:|..
plant   112 VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSV 176

  Fly   130 MSHEDPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARA 194
            |..|.....:|:.||||..||:|::|.:||||.:|||:..:||.||||.:|||.|||||||||:|
plant   177 MKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKA 241

  Fly   195 VASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADR 259
            ||:...|.||:||.|.::.||:|:..:|:||:|..|.|..|.|:|:|||||:|.:|:...:..:|
plant   242 VANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGER 306

  Fly   260 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 324
            |||||::|||||:|||||.|.||:|:||||.::||||||||||:|||||.|||:.:.|..|.:||
plant   307 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 371

  Fly   325 ALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKK 387
            ..|:....:::.|..|...|.|:|||::.:||||||.|:|..|..|...||.||..||...||
plant   372 TSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKK 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4NP_572308.3 RPT1 13..395 CDD:224143 170/378 (45%)
AAA 179..311 CDD:278434 79/131 (60%)
RPT2bNP_179604.1 PTZ00361 7..443 CDD:185575 174/388 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D571919at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.