DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4 and psmc3

DIOPT Version :9

Sequence 1:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_001006786.1 Gene:psmc3 / 448481 XenbaseID:XB-GENE-1009848 Length:423 Species:Xenopus tropicalis


Alignment Length:393 Identity:165/393 - (41%)
Similarity:233/393 - (59%) Gaps:28/393 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SEYRKKLLEHKEIEGRLKEKREEIK----------DLTKLYDKSENDLKA------LQSVGQIVG 66
            ||..:...|.:.:..::||..|:||          ::.:|.|...||.:.      |.|..:...
 Frog    41 SEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKC 105

  Fly    67 EVLKQLTEDKFIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMS 131
            .|:|..|...:.:.       |:|.   :|..|||.|..|.::..:..|:..||.|.|..|..|.
 Frog   106 AVIKTSTRQTYFLP-------VIGL---VDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME 160

  Fly   132 HEDPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVA 196
            .::.....||.||||..||:||.|.|.||:.:.|.|..:||.||||.|:||||||||||||||.|
 Frog   161 VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 225

  Fly   197 SQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREI 261
            :|..|.|||:....:|..:||:.|:|:|:.|..|::..|.|||:||:||||.:||....:.|||:
 Frog   226 AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREV 290

  Fly   262 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAL 326
            |||::|||||:|||....|||:|.||||.|.|||||||.||||||||.|:|||:||..|::||:.
 Frog   291 QRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSR 355

  Fly   327 KIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKKLESK 391
            |:....:::||.:.:.:|:||||..:.||.|||:.|:|.....:..||:|:.:.:|...||  :.
 Frog   356 KMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKK--AN 418

  Fly   392 LDY 394
            |.|
 Frog   419 LQY 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4NP_572308.3 RPT1 13..395 CDD:224143 165/393 (42%)
AAA 179..311 CDD:278434 79/131 (60%)
psmc3NP_001006786.1 RPT1 28..416 CDD:224143 161/384 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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