Protein Alignment Rpt4 and psmc1b

DIOPT Version :9

• Sequence 1: NP_572308.3
• Gene: Rpt4 / 31567
• FlyBaseID: FBgn0028685
• Length: 397
• Species: Drosophila melanogaster
• Sequence 2: NP_001002091.1
• Gene: psmc1b / 415181
• ZFINID: ZDB-GENE-040625-69
• Length: 440
• Species: Danio rerio
• Alignment Length: 386
• Identity: 168/386 - (43%)
• Similarity: 247/386 - (63%)
• Gaps: 24/386 - (6%)

  Fly    13 RVKALSEYRKK---LLEHKEIEGR-----LKEKREEIKDLTKLYDKSE-NDLKAL-QSVGQIVGE 67
            |:|.|.:.|.|   |:|.:.|..:     |:||:||        ::|: :||:.. .|||
Zfish    59 RLKLLKQDRIKDYLLMEEEFIRNQEQMKPLEEKQEE--------ERSKVDDLRGTPMSVG----- 110

  Fly    68 VLKQLTEDKFIVKATN-GPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMS 131
            .|:::.:|...:.:|: |..:.|.....:||..|:.|..|.|:.....::..|..:.||||..|.
Zfish   111 TLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMK 175

  Fly   132 HEDPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVA 196
            .|.....||:.||||.:||:|::|.:||||.:||.:..:||.||||.:|||.|||||||||:|||
Zfish   176 VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 240

  Fly   197 SQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREI 261
            :|..|.||:||.|.::.||:|:..:|:||:|..|.:|.|.|:|:|||||||.:|:...:..:|||
Zfish   241 NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREI 305

  Fly   262 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAL 326
            |||::|||||:|||||.|.||:||||||.:||||||:||||:|||||.|||:|:.:..|.:||..
Zfish   306 QRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTS 370

  Fly   327 KIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKK 387
            ::....::..:.::...|:.:|||::.:||||||.|:|..|..|..|||.|:...|...|:
Zfish   371 RMTVAEDVSLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt4	NP_572308.3	RPT1	13..395	CDD:224143	168/386 (44%)
		AAA	179..311	CDD:278434	82/131 (63%)
psmc1b	NP_001002091.1	PTZ00361	1..440	CDD:185575	168/386 (44%)
		Prot_ATP_ID_OB	108..>176	CDD:293059	20/72 (28%)
		AAA	222..355	CDD:278434	82/132 (62%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D298123at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.920