Protein Alignment Rpt4 and psmc1a

DIOPT Version :9

• Sequence 1: NP_572308.3
• Gene: Rpt4 / 31567
• FlyBaseID: FBgn0028685
• Length: 397
• Species: Drosophila melanogaster
• Sequence 2: NP_956327.1
• Gene: psmc1a / 336786
• ZFINID: ZDB-GENE-030131-8730
• Length: 440
• Species: Danio rerio
• Alignment Length: 381
• Identity: 166/381 - (43%)
• Similarity: 243/381 - (63%)
• Gaps: 16/381 - (4%)

  Fly    18 SEYRKKLLEHKEIEGRLKEKREEIKD---LTKLYDKSE------NDLKAL-QSVGQIVGEVLKQL 72
            ::.|.|||:.:.|:..|..:.|.|:|   :..|.:|.|      :||:.. .|||     .|:::
Zfish    56 TQCRLKLLKQERIKDYLLMEEEFIRDQEQMKPLEEKQEEERSKVDDLRGTPMSVG-----TLEEI 115

  Fly    73 TEDKFIVKATN-GPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPG 136
            .:|...:.:|: |..:.|.....:||..|:.|..|.|:.....::..|..:.||||..|..|...
Zfish   116 IDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

  Fly   137 DVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 201
            ..||:.||||..||:|::|.:||||.:||.:..:||.||||.:|||.|||||||||:|||:|..|
Zfish   181 QETYADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 245

  Fly   202 NFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 266
            .||:||.|.::.||:|:..:|:||:|..|.:|.|.|:|:|||||||.:|:...:..:||||||::
Zfish   246 TFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML 310

  Fly   267 ELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKH 331
            |||||:|||||.|.||:||||||.:||||||:||||:|||||.|||:|:.:..|.:||..::...
Zfish   311 ELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVA 375

  Fly   332 GEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKK 387
            .::..:.::...|:.:|||::.:||||||.|:|..|..|..|||.|:...|...|:
Zfish   376 DDVTLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpt4	NP_572308.3	RPT1	13..395	CDD:224143	166/381 (44%)
		AAA	179..311	CDD:278434	82/131 (63%)
psmc1a	NP_956327.1	PTZ00361	25..440	CDD:185575	166/381 (44%)
		Prot_ATP_ID_OB	108..>176	CDD:293059	20/72 (28%)
		AAA	222..355	CDD:278434	82/132 (62%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D298123at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.920