DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4 and rpt-3

DIOPT Version :9

Sequence 1:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_498429.1 Gene:rpt-3 / 175925 WormBaseID:WBGene00004503 Length:414 Species:Caenorhabditis elegans


Alignment Length:369 Identity:159/369 - (43%)
Similarity:231/369 - (62%) Gaps:16/369 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VKALSEYRKKLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEVLKQLTEDKFI 78
            ::.:.:|.|  ||.:.:|..|...:||:              |.:|||..::|:.|:.:.::..|
 Worm    50 LQVMEDYIK--LETRNLEKELLHAQEEV--------------KRIQSVPLVIGQFLEAVDQNHAI 98

  Fly    79 VKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVTYSAI 143
            |.:|.|..|.|.....||:..||.|..|||...:..::..||.|.|..:..:..::..|::|..|
 Worm    99 VGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDI 163

  Fly   144 GGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 208
            |||..|.:|:||.:||||.:.||:.::||.||:|.|:|||||.|||:||:|||:...|:|::||.
 Worm   164 GGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVG 228

  Fly   209 SAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 273
            |..|.||:||..|::|::|..|:::.|.|||:||||||..:||...|.||||:||.|:|||||||
 Worm   229 SEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMD 293

  Fly   274 GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEA 338
            |||....||:||||||.||||||||||||||||||.|||:.:.:..:......::....::|.|.
 Worm   294 GFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLED 358

  Fly   339 IVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKV 382
            .|...|..:|||:.::|.|||:.|:|..|..|:.:|..||.:.|
 Worm   359 WVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNV 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4NP_572308.3 RPT1 13..395 CDD:224143 159/369 (43%)
AAA 179..311 CDD:278434 84/131 (64%)
rpt-3NP_498429.1 PTZ00454 35..414 CDD:240423 159/369 (43%)
AAA 198..331 CDD:278434 84/132 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1222
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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