DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4 and F56F11.4

DIOPT Version :9

Sequence 1:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_001367906.1 Gene:F56F11.4 / 175403 WormBaseID:WBGene00018991 Length:432 Species:Caenorhabditis elegans


Alignment Length:369 Identity:178/369 - (48%)
Similarity:238/369 - (64%) Gaps:16/369 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RKKLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEVLKQLTEDKFIVKATNGP 85
            |:.:.:.||:.|:::..:|||..              |...|..||||.|.:.:.|.:||.....
 Worm    69 RRLMAQQKELNGKVRLLKEEISH--------------LHEQGSHVGEVCKAMDKKKVLVKNHPDG 119

  Fly    86 RYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVTYSAIGGLTDQI 150
            :|:|.....:|.:.|.:||||||......|...||.:|||||..|..|...|.||..:|||..||
 Worm   120 KYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQI 184

  Fly   151 RELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKY 215
            :|::||||||:.:||||..:||..|||.||||||||||||||||||...:..|::|..|.:|.|:
 Worm   185 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 249

  Fly   216 IGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 280
            |||.||::||:|..||:|.|.||||||||:||..|.......|.|:|||::|||||:|||::...
 Worm   250 IGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKN 314

  Fly   281 VKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
            :|:||||||.|.||.|||||||:|||||.|.|:|:||.:|||||:.|:.....|..:.|.:....
 Worm   315 IKVIMATNRIDILDSALLRPGRIDRKIEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIPG 379

  Fly   346 FNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKV--SDNKK 387
            .:||::::||||||:||:|..|.:|.||||..||.||  .|::|
 Worm   380 ASGAEVKSVCTEAGMFALRERRIHVTQEDFEMAVGKVMQKDSEK 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4NP_572308.3 RPT1 13..395 CDD:224143 178/369 (48%)
AAA 179..311 CDD:278434 81/131 (62%)
F56F11.4NP_001367906.1 RPT1 51..430 CDD:224143 178/369 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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