DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt4 and Psmc1

DIOPT Version :10

Sequence 1:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_476464.1 Gene:Psmc1 / 117263 RGDID:621097 Length:440 Species:Rattus norvegicus


Alignment Length:382 Identity:164/382 - (42%)
Similarity:248/382 - (64%) Gaps:19/382 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LRVKALSEY---RKKLLEHKEIEGRLKEKREEIKDLTKLYDKSE-NDLKAL-QSVGQIVGEVLKQ 71
            |:::.:.:|   .::.:.::|....|:||:||        ::|: :||:.. .|||     .|::
  Rat    63 LKLERIKDYLLMEEEFIRNQEQMKPLEEKQEE--------ERSKVDDLRGTPMSVG-----TLEE 114

  Fly    72 LTEDKFIVKATN-GPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDP 135
            :.:|...:.:|: |..:.|.....:||..|:.|..|.|:.....::..|..:.||||..|..|..
  Rat   115 IIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKA 179

  Fly   136 GDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 200
            ...||:.||||.:||:|::|.:||||.:||.:..:||.||||.:|||||||||||||:|||:|..
  Rat   180 PQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 244

  Fly   201 ANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 265
            |.||:||.|.::.||:|:..:|:||:|..|.:|.|.|:|:|||||||.:|:...:..:||||||:
  Rat   245 ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309

  Fly   266 MELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAK 330
            :|||||:|||||.|.||:||||||.:||||||:||||:|||||.|||:|:.:..|.:||..::..
  Rat   310 LELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTL 374

  Fly   331 HGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKK 387
            ..::..:.::...|:.:|||::.:||||||.|:|..|..|..|||.|:...|...|:
  Rat   375 ADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt4NP_572308.3 PRK03992 13..387 CDD:179699 162/379 (43%)
Psmc1NP_476464.1 PTZ00361 1..440 CDD:185575 164/382 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 8/27 (30%)
Blue background indicates that the domain is not in the aligned region.

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