DRSC/TRiP Functional Genomics Resources

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Protein Alignment Top3beta and Y48C3A.14

DIOPT Version :9

Sequence 1:NP_001284938.1 Gene:Top3beta / 31565 FlyBaseID:FBgn0026015 Length:875 Species:Drosophila melanogaster
Sequence 2:NP_001254381.1 Gene:Y48C3A.14 / 174978 WormBaseID:WBGene00012995 Length:869 Species:Caenorhabditis elegans


Alignment Length:872 Identity:435/872 - (49%)
Similarity:581/872 - (66%) Gaps:41/872 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SVLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGSVHFRMTSVCGHVMSLDF 67
            :||||||||.||.|:|.:||||:...::|....||..|:.|.| |..:..|::||.|||||||||
 Worm     4 TVLMVAEKPLLADSIANLLSNGQAKKRKGWNGVCSVSEYDGQF-NGRAARFKVTSTCGHVMSLDF 67

  Fly    68 NKKYNCWDKVDPIQLFGCATEKKETNPKQNMRKFLAHEARGCDYLVLWLDCDKEGENICFEVMDA 132
            ..|:|.|::|||.:|:...|::.|.|||..|.:|||.||:..|:||||||||||||||||||:||
 Worm    68 PPKFNNWERVDPAELYSAPTQRIEANPKMKMNEFLASEAKNADFLVLWLDCDKEGENICFEVIDA 132

  Fly   133 VKHVI----NNVYSDQVTYRAHFSAITEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTR 193
            ||..:    .:..||  .||||||||||||||.||..||.|::|.:.||||||||||||||:|||
 Worm   133 VKCAMFKNRQDFMSD--VYRAHFSAITEKDIKAAMRNLGRPDQNMSHSVDARQELDLRIGCSFTR 195

  Fly   194 FQTKFFQDRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPESFWHLQ---LLAGQPEV-TLE 254
            |||||||.:||||||::|||||||||||||||.|||.|..||||.:|.|:   ..:...:: :.|
 Worm   196 FQTKFFQGKYGDLDSNVISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNFTTSDDGQIFSPE 260

  Fly   255 WARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQALNTVELMRICSSGLGIGPFQAMQ 319
            |.|||:|..::|.:.::|:|:.....|..|:.|||.|.:|.|||||||||:.||.||:.|...|.
 Worm   261 WQRGRIFDAEVARVFVDRIKKCHTGLVLDVSKKEARKERPCALNTVELMRVASSSLGMSPSTTMH 325

  Fly   320 IAERLYTQGYISYPRTETNQYPTNFDLPAVLHVLKPSADFGEEARSILGD-IQTPRKGKDAGDHP 383
            :||.||||||||||||||..|..||||...|.:|.....:|.....:|.| |:.|:.|.|.||||
 Worm   326 VAEALYTQGYISYPRTETTAYSANFDLTGTLKILAGDRKWGSVVSQVLADGIKRPKSGVDKGDHP 390

  Fly   384 PITPMKLGNRSDFDRDTWRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFT 448
            |||||: .|......|..|:||::.:||:.|:.:...|.|||.|:|.|.|.|:.....:::.|||
 Worm   391 PITPMR-PNHGGLSGDMSRIYEYVSQHFVATLMKQCVYEVTTVKMSCGDEQFTLQGKNVVEPGFT 454

  Fly   449 KVMTWSAFGKDEPQPPFVQ--GTQVAINDVRLIESQTGPPDYLTESELITLMEEHGIGTDASIPV 511
            .||.|.:..::...|..:|  |.::.:.:..:...:|.||.||||:|||||||:|||||||||||
 Worm   455 AVMPWLSVEEECSVPKSLQQIGAKIELQNAEIQARETTPPGYLTEAELITLMEKHGIGTDASIPV 519

  Fly   512 HINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPELVLPTMRTEVERMLTLIAQGSANFQDV 576
            |||.|.|||||.:|:||:|:||.||..||.||.|:||||||||||.|:|..|.|:|.|.|::.||
 Worm   520 HINTITQRNYVTVESGRRLVPTRLGQCLVRGYWKVDPELVLPTMRAELEEQLNLVASGKADYLDV 584

  Fly   577 LRHAIKIFKLKFMYFVKNIDSMDALFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHC 641
            ..||:|:|::||.|||.||.::|.|||.||:.|:::||..|||||||||||.:||||.||:|..|
 Worm   585 KNHALKMFEMKFQYFVTNIPAVDTLFEASFTTLSDTGKPFSRCGKCRRYMKLVQTKPQRLYCPTC 649

  Fly   642 DETYALP---IGNVKVYREFKCPLDDFDLLAFS--TGVKGRSYPFCPYCYNHPPFSDMPHLGGCN 701
            .||||:|   .|.:||..:.||||||||::.:.  .|...|::..||:|:|:|||..||...||:
 Worm   650 QETYAVPNFKDGVLKVIGDHKCPLDDFDVILYQGPGGKLARTFTLCPFCFNNPPFEKMPQGAGCD 714

  Fly   702 TCTNANCPHSLNTLGISSCVECPTGVLVLDCTLAPTWKLGCNRCDVIINCFKGATKITVEEAK-C 765
            ||.:.:|.:|:::.|:..|::...||::||....|.|::.||:|..::..|:||.|:.|:..: |
 Worm   715 TCVHPSCQYSISSNGVCGCLQDCGGVMLLDTQSHPKWRMTCNKCPSVVGLFEGAIKVKVDSTRSC 779

  Fly   766 QECGAQQVNVVYKSDKSK-----FKDGSEEKSGCIFCSA----------DFSHLVEKHRAVASRP 815
            ::|.||.:...:|.:..|     ::..|.|  |||||.|          :.::|.|:.|...::.
 Worm   780 EQCDAQFIKAEFKPNSGKPGAIEYESSSYE--GCIFCDAMKKYPDAINLNHAYLTEESRQRNTQA 842

  Fly   816 VRSGGGFRGGKAGRGGGGMGGAAFGSG 842
            .|.|||  ||: ||||.|.||...|.|
 Worm   843 PRRGGG--GGR-GRGGRGRGGRGRGRG 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Top3betaNP_001284938.1 PRK07219 4..781 CDD:235971 408/793 (51%)
TOPRIM_TopoIA_TopoIII 4..166 CDD:173782 94/165 (57%)
TOP1Ac 171..588 CDD:238110 222/423 (52%)
Y48C3A.14NP_001254381.1 PRK07219 4..739 CDD:235971 389/738 (53%)
TOPRIM_TopoIA_TopoIII 4..168 CDD:173782 94/166 (57%)
TOP1Ac 174..593 CDD:238110 221/419 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167279
Domainoid 1 1.000 435 1.000 Domainoid score I287
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2923
Inparanoid 1 1.050 856 1.000 Inparanoid score I221
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62408
OrthoDB 1 1.010 - - D104272at33208
OrthoFinder 1 1.000 - - FOG0000966
OrthoInspector 1 1.000 - - oto20084
orthoMCL 1 0.900 - - OOG6_103726
Panther 1 1.100 - - LDO PTHR11390
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3324
SonicParanoid 1 1.000 - - X3364
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.940

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