DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG11700 and RAD23A

DIOPT Version :9

Sequence 1:	NP_572306.1	Gene:	CG11700 / 31564	FlyBaseID:	FBgn0029856	Length:	301	Species:	Drosophila melanogaster
Sequence 2:	NP_173070.1	Gene:	RAD23A / 838188	AraportID:	AT1G16190	Length:	368	Species:	Arabidopsis thaliana

Alignment Length:	223	Identity:	55/223 - (24%)
Similarity:	92/223 - (41%)	Gaps:	36/223 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEENPPEHQRLIFGGKHLENGRTLSDYNIQ 62
            |::.||||.|....:.|.|:|||..||..|:|   |:..|...|.||..||.|::..||.:..:.
plant     1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVT 65

  Fly    63 KESTIYLVLRL--------RGGMQIFVKTLTGKTI--TLEVEPSDTIE-NVKAKIQDKEENPPEH 116
            :|.  :||:.|        .|.......:.|..||  |....||.|.. .|.|......:..|..
plant    66 EEG--FLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTA 128

  Fly   117 QRLIFG--GKHLENGRTLSDYNIQKESTIYLVLRLRGGMQIFVKTLTGKTITLEV-----EPSDS 174
            |...:|  ...|.:|.::       |..:..::.:.||      :...:|:|..:     .|..:
plant   129 QSDTYGQAASTLVSGSSI-------EQMVQQIMEMGGG------SWDKETVTRALRAAYNNPERA 180

  Fly   175 IENVKARIHDKEGIPPDQQRLIFAGKQL 202
            ::.:.:.|.:...||......:.:|::|
plant   181 VDYLYSGIPETVTIPATNLSGVGSGREL 208

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG11700	NP_572306.1	Ubiquitin	1..76	CDD:176398	29/85 (34%)
		UBQ	1..72	CDD:214563	28/73 (38%)
		Ubiquitin	77..152	CDD:176398	15/79 (19%)
		UBQ	77..148	CDD:214563	15/75 (20%)
		Ubiquitin	153..228	CDD:176398	8/55 (15%)
		UBQ	153..224	CDD:214563	8/55 (15%)
		UBQ	229..296	CDD:214563
		UBQ	229..296	CDD:294102
RAD23A	NP_173070.1	rad23	1..365	CDD:273167	55/223 (25%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5272
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810