DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11700 and nedd8

DIOPT Version :9

Sequence 1:NP_572306.1 Gene:CG11700 / 31564 FlyBaseID:FBgn0029856 Length:301 Species:Drosophila melanogaster
Sequence 2:NP_001016973.1 Gene:nedd8 / 549727 XenbaseID:XB-GENE-6067551 Length:77 Species:Xenopus tropicalis


Alignment Length:76 Identity:46/76 - (60%)
Similarity:59/76 - (77%) Gaps:0/76 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 MQIFVKTLTGKTITLEVEPSDSIENVKARIHDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 217
            |.|.|||||||.|.:::||:|.:|.:|.|:.:||||||.|||||::|||:.|.:|.:||.||..|
 Frog     1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIQGGS 65

  Fly   218 TLHLVLRLRGG 228
            .|||||.||||
 Frog    66 VLHLVLALRGG 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11700NP_572306.1 Ubiquitin 1..76 CDD:176398
UBQ 1..72 CDD:214563
Ubiquitin 77..152 CDD:176398
UBQ 77..148 CDD:214563
Ubiquitin 153..228 CDD:176398 44/74 (59%)
UBQ 153..224 CDD:214563 41/70 (59%)
UBQ 229..296 CDD:214563 46/76 (61%)
UBQ 229..296 CDD:294102 46/76 (61%)
nedd8NP_001016973.1 Ubl_NEDD8 3..76 CDD:340504 43/72 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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