DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11700 and Ubd

DIOPT Version :10

Sequence 1:NP_572306.1 Gene:CG11700 / 31564 FlyBaseID:FBgn0029856 Length:301 Species:Drosophila melanogaster
Sequence 2:NP_075626.1 Gene:Ubd / 24108 MGIID:1344410 Length:162 Species:Mus musculus


Alignment Length:148 Identity:45/148 - (30%)
Similarity:74/148 - (50%) Gaps:6/148 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 KTITLEVEPSDTIENVKAKIQDKEENPPEHQRLIFGGKHLENGRTLSDYNIQKESTIYLVLRL-- 149
            :.:|.|...:|.::.:...|:.:.:...:.|.|:...|.|:..|.||.|.|.||:||:|.|::  
Mouse    15 RLMTFETTENDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRKLSSYGIDKETTIHLTLKVVK 79

  Fly   150 --RGGMQIFV--KTLTGKTITLEVEPSDSIENVKARIHDKEGIPPDQQRLIFAGKQLEDGRTLSD 210
              ...:.:|:  ....|:...|.|..|.|:..||..|.....:.|.:|.:...||:||||:.::|
Mouse    80 PSDEELPLFLVESKNEGQRHLLRVRRSSSVAQVKEMIESVTSVIPKKQVVNCNGKKLEDGKIMAD 144

  Fly   211 YNIQKESTLHLVLRLRGG 228
            |||:..|.|.|.....||
Mouse   145 YNIKSGSLLFLTTHCTGG 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11700NP_572306.1 Ubl1_cv_Nsp3_N-like 1..76 CDD:475130
Ubl1_cv_Nsp3_N-like 77..152 CDD:475130 19/68 (28%)
Ubl_ubiquitin 153..228 CDD:340501 24/76 (32%)
Ubl1_cv_Nsp3_N-like 229..296 CDD:475130 45/148 (30%)
UbdNP_075626.1 Ubl1_cv_Nsp3_N-like 9..79 CDD:475130 19/63 (30%)
Ubl1_cv_Nsp3_N-like 87..156 CDD:475130 23/68 (34%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.