Protein Alignment CG11700 and rad-23

DIOPT Version :9

• Sequence 1: NP_572306.1
• Gene: CG11700 / 31564
• FlyBaseID: FBgn0029856
• Length: 301
• Species: Drosophila melanogaster
• Sequence 2: NP_496488.2
• Gene: rad-23 / 174785
• WormBaseID: WBGene00013924
• Length: 323
• Species: Caenorhabditis elegans
• Alignment Length: 312
• Identity: 64/312 - (20%)
• Similarity: 109/312 - (34%)
• Gaps: 82/312 - (26%)

  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EENPPEHQRLIFGGKHLENGRTLSDYNIQK 63
            :.:..:|||.....||:....||..|||.:..:  ::..||.|:||:.||.|::...:.:.....
 Worm     3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVGEVGFDS 67

  Fly    64 ESTIYLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV----------------KAKIQDKEEN 112
            ..              ||..:..|....||.||.|:...                .|.:..:...
 Worm    68 SK--------------FVVVMLSKRKVTEVAPSSTVATAAEPVPVAAAPASNPAPAADVAPEAAA 118

  Fly   113 PPEHQRLIFGGKHLENGRTLSDYNIQKESTIYLVLRLRG-------GMQIFVKTLTGKTITLEVE 170
            |.|.:.|.  .:..||...::.....:|.||   ..||.       .::..:..|.......|.:
 Worm   119 PAEAEALT--DEQEENVLAITGMGYDREQTI---AALRAAFWNPDRAVEFLLNGLPDDAADQEPD 178

  Fly   171 --PSDSIENVKARIHDKEGIPPDQQRLIFAGKQLEDGRTLSDYN-------IQKESTLH--LVLR 224
              |..:|:||     |::|  .|...::....||.:.|.|...|       :|:.:.::  ||..
 Worm   179 LGPEQNIDNV-----DEDG--NDDLNMLANMPQLAEIRALIQQNPEMLAAVLQQLAAVNPRLVQT 236

  Fly   225 LRGGMQIFVKTLTG--------------------KTITLEVEPSDTIKHVKA 256
            ::...|.|:..|.|                    ..|.|..|.:..|:.:||
 Worm   237 IQNNQQAFMDLLNGGAQGAGAAAGNAPERNTPRRHVIHLSPEEAAAIERIKA 288

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG11700	NP_572306.1	Ubiquitin	1..76	CDD:176398	18/76 (24%)
		UBQ	1..72	CDD:214563	18/72 (25%)
		Ubiquitin	77..152	CDD:176398	19/97 (20%)
		UBQ	77..148	CDD:214563	17/86 (20%)
		Ubiquitin	153..228	CDD:176398	17/85 (20%)
		UBQ	153..224	CDD:214563	17/81 (21%)
		UBQ	229..296	CDD:214563	10/48 (21%)
		UBQ	229..296	CDD:294102	10/48 (21%)
rad-23	NP_496488.2	rad23	3..319	CDD:273167	64/312 (21%)
		RAD23_N	3..79	CDD:176400	21/89 (24%)
		UBA1_Rad23_like	128..166	CDD:270466	7/40 (18%)
		XPC-binding	196..248	CDD:286376	10/51 (20%)
		UBA_like_SF	278..318	CDD:304366	4/11 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5272
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900