DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11700 and rad-23

DIOPT Version :9

Sequence 1:NP_572306.1 Gene:CG11700 / 31564 FlyBaseID:FBgn0029856 Length:301 Species:Drosophila melanogaster
Sequence 2:NP_496488.2 Gene:rad-23 / 174785 WormBaseID:WBGene00013924 Length:323 Species:Caenorhabditis elegans


Alignment Length:312 Identity:64/312 - (20%)
Similarity:109/312 - (34%) Gaps:82/312 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EENPPEHQRLIFGGKHLENGRTLSDYNIQK 63
            :.:..:|||.....||:....||..|||.:..:  ::..||.|:||:.||.|::...:.:.....
 Worm     3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVGEVGFDS 67

  Fly    64 ESTIYLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV----------------KAKIQDKEEN 112
            ..              ||..:..|....||.||.|:...                .|.:..:...
 Worm    68 SK--------------FVVVMLSKRKVTEVAPSSTVATAAEPVPVAAAPASNPAPAADVAPEAAA 118

  Fly   113 PPEHQRLIFGGKHLENGRTLSDYNIQKESTIYLVLRLRG-------GMQIFVKTLTGKTITLEVE 170
            |.|.:.|.  .:..||...::.....:|.||   ..||.       .::..:..|.......|.:
 Worm   119 PAEAEALT--DEQEENVLAITGMGYDREQTI---AALRAAFWNPDRAVEFLLNGLPDDAADQEPD 178

  Fly   171 --PSDSIENVKARIHDKEGIPPDQQRLIFAGKQLEDGRTLSDYN-------IQKESTLH--LVLR 224
              |..:|:||     |::|  .|...::....||.:.|.|...|       :|:.:.::  ||..
 Worm   179 LGPEQNIDNV-----DEDG--NDDLNMLANMPQLAEIRALIQQNPEMLAAVLQQLAAVNPRLVQT 236

  Fly   225 LRGGMQIFVKTLTG--------------------KTITLEVEPSDTIKHVKA 256
            ::...|.|:..|.|                    ..|.|..|.:..|:.:||
 Worm   237 IQNNQQAFMDLLNGGAQGAGAAAGNAPERNTPRRHVIHLSPEEAAAIERIKA 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11700NP_572306.1 Ubiquitin 1..76 CDD:176398 18/76 (24%)
UBQ 1..72 CDD:214563 18/72 (25%)
Ubiquitin 77..152 CDD:176398 19/97 (20%)
UBQ 77..148 CDD:214563 17/86 (20%)
Ubiquitin 153..228 CDD:176398 17/85 (20%)
UBQ 153..224 CDD:214563 17/81 (21%)
UBQ 229..296 CDD:214563 10/48 (21%)
UBQ 229..296 CDD:294102 10/48 (21%)
rad-23NP_496488.2 rad23 3..319 CDD:273167 64/312 (21%)
RAD23_N 3..79 CDD:176400 21/89 (24%)
UBA1_Rad23_like 128..166 CDD:270466 7/40 (18%)
XPC-binding 196..248 CDD:286376 10/51 (20%)
UBA_like_SF 278..318 CDD:304366 4/11 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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