DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11700 and RpL40

DIOPT Version :10

Sequence 1:NP_572306.1 Gene:CG11700 / 31564 FlyBaseID:FBgn0029856 Length:301 Species:Drosophila melanogaster
Sequence 2:XP_317555.2 Gene:RpL40 / 1278028 VectorBaseID:AGAMI1_014091 Length:128 Species:Anopheles gambiae


Alignment Length:121 Identity:81/121 - (66%)
Similarity:87/121 - (71%) Gaps:27/121 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 MQIFVKTLTGKTITLEVEPSDSIENVKARIHDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 217
            |||||||||||||||||||||:||||||:|.||||||||||||||||||||||||||||||||||
Mosquito     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

  Fly   218 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIKHVK------------ARIHDK 261
            |||||||||||:               :|||..|...|            ||:|.:
Mosquito    66 TLHLVLRLRGGI---------------IEPSLRILAQKYNCDKMICRKCYARLHPR 106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11700NP_572306.1 Ubl1_cv_Nsp3_N-like 1..76 CDD:475130
Ubl1_cv_Nsp3_N-like 77..152 CDD:475130
Ubl_ubiquitin 153..228 CDD:340501 71/74 (96%)
Ubl1_cv_Nsp3_N-like 229..296 CDD:475130 8/45 (18%)
RpL40XP_317555.2 Ubl_ubiquitin 1..76 CDD:340501 71/74 (96%)
Ribosomal_L40e 79..126 CDD:395807 8/28 (29%)
Blue background indicates that the domain is not in the aligned region.

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