DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spx and PRP24

DIOPT Version :10

Sequence 1:NP_511058.1 Gene:Spx / 31558 FlyBaseID:FBgn0015818 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_013995.1 Gene:PRP24 / 855310 SGDID:S000004881 Length:444 Species:Saccharomyces cerevisiae


Alignment Length:183 Identity:58/183 - (31%)
Similarity:94/183 - (51%) Gaps:23/183 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPI--RVNKAS 90
            ||.::.|.|   :::.:|..|.....: :.:::..|:|||.|.::.:|.:|:.|..:  :|:...
Yeast   136 LLQDINVVA---LSIRLPSLRFNTSRR-FAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 196

  Fly    91 AHQKNLD----VGANIFIGNLDVE-VDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSF----AF 146
            ...|..|    .|..|.|.||..| :||.||.::|..||.|    :.:..|...|..||    ||
Yeast   197 EKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSI----EKINIPAGQKEHSFNNCCAF 257

  Fly   147 INFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQN 199
            :.|.:.::::.|:. ||...|.||.||||.|.||... ||  :..:||||::|
Yeast   258 MVFENKDSAERALQ-MNRSLLGNREISVSLADKKPFL-ER--NEVKRLLASRN 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpxNP_511058.1 RRM1_SF3B4 15..88 CDD:409771 15/61 (25%)
RRM2_SF3B4 99..181 CDD:409772 33/86 (38%)
PRP24NP_013995.1 RRM1_Prp24 41..113 CDD:409737
RRM2_Prp24 117..195 CDD:409738 15/62 (24%)
RRM3_Prp24 210..286 CDD:409739 29/80 (36%)
RRM4_Prp24 312..386 CDD:409740
Lsm_interact 425..443 CDD:398843
Blue background indicates that the domain is not in the aligned region.

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