Protein Alignment Spx and PAB3

DIOPT Version :10

• Sequence 1: NP_511058.1
• Gene: Spx / 31558
• FlyBaseID: FBgn0015818
• Length: 347
• Species: Drosophila melanogaster
• Sequence 2: NP_173690.1
• Gene: PAB3 / 838882
• AraportID: AT1G22760
• Length: 660
• Species: Arabidopsis thaliana
• Alignment Length: 193
• Identity: 61/193 - (31%)
• Similarity: 107/193 - (55%)
• Gaps: 7/193 - (3%)

  Fly     5 PIAERNQ---DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEED 66
            |:...:|   ::::|||.||.||:|..|::||.....||:|.:.:|: .:...||.::.|.:..|
plant    38 PVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPND 101

  Fly    67 ADYGIKIMNMIKLYGKPIRVNKASAH-QKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTP 130
            |...::.:|...|:.:|||:..::.. ...|....||||.|||..:|.|.|::|||:||.||..
plant   102 AYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC- 165

  Fly   131 KIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAER 193
            |:..| .||:||.:.|:.|...|::.||:|.:||..:.::.:.|.:..::..:.....:...|
plant   166 KVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Spx	NP_511058.1	RRM1_SF3B4	15..88	CDD:409771	25/72 (35%)
		RRM2_SF3B4	99..181	CDD:409772	32/81 (40%)
PAB3	NP_173690.1	PABP-1234	49..644	CDD:130689	59/182 (32%)