Protein Alignment Spx and PAB6

DIOPT Version :10

• Sequence 1: NP_511058.1
• Gene: Spx / 31558
• FlyBaseID: FBgn0015818
• Length: 347
• Species: Drosophila melanogaster
• Sequence 2: NP_188259.1
• Gene: PAB6 / 820885
• AraportID: AT3G16380
• Length: 537
• Species: Arabidopsis thaliana
• Alignment Length: 273
• Identity: 69/273 - (25%)
• Similarity: 122/273 - (44%)
• Gaps: 56/273 - (20%)

  Fly    10 NQDAT-IYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKI 73
            |||:| :|...|.:.|::..|..||.|.|.|.:|.:.:|.:.: .:|:|||.|.:.|:|...::.
plant   198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGR-SRGFGFVNFCNPENAKKAMES 261

  Fly    74 MNMIKLYGKPIRVNKASAHQKNLDV----------------GANIFIGNLDVEVDEKLLYDTFSA 122
            :..::|..|.:.|.||....:..::                .:|:::.||...::|..|.:.|..
plant   262 LCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGC 326

  Fly   123 FGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERH 187
            :|.|: :.|:|.. |.|:||.|.|:.|::.|.|..|...:||..:..:||.|..|.:|:.:.:|
plant   327 YGQIV-SAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKR- 388

  Fly   188 GSAAERLLAAQNPSTHADRPHQLFADAPVQTMM--------------------------PQMPG- 225
               .::...|| |..:...|.   |.:|.|.::                          |||.|
plant   389 ---LQQYFQAQ-PRQYTQAPS---APSPAQPVLSYVSSSYGCFQPFQVGTSYYYMGNQVPQMSGH 446

  Fly   226 -QIPAQMPGQMMP 237
             .|...:|...:|
plant   447 QNITTYVPAGKVP 459

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Spx	NP_511058.1	RRM1_SF3B4	15..88	CDD:409771	21/72 (29%)
		RRM2_SF3B4	99..181	CDD:409772	26/81 (32%)
PAB6	NP_188259.1	PABP-1234	22..477	CDD:130689	69/273 (25%)