Protein Alignment Spx and PAB4

DIOPT Version :10

• Sequence 1: NP_511058.1
• Gene: Spx / 31558
• FlyBaseID: FBgn0015818
• Length: 347
• Species: Drosophila melanogaster
• Sequence 2: NP_179916.1
• Gene: PAB4 / 816867
• AraportID: AT2G23350
• Length: 662
• Species: Arabidopsis thaliana
• Alignment Length: 518
• Identity: 108/518 - (20%)
• Similarity: 162/518 - (31%)
• Gaps: 223/518 - (43%)

  Fly    14 TIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIK 78
            ::|.|.||..|:::.|::.|.:...||:|.:.:|..|....|||:|.:.:.:||:..::.:|...
plant    47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSY 111

  Fly    79 LYGKPIRVNKAS--AHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVI--------------- 126
            |.||.||:..:|  :..:...|| |:|:.|||..||.|.|::.||..|.|
plant   112 LNGKMIRITYSSRDSSARRSGVG-NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRG 175

  Fly   127 ----------------------------------------------------------------- 126
                                                                             
plant   176 YGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDE 240

  Fly   127 ----------LQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKK- 180
                      :.:..:|||.: |||:.|.|:||.:.|.:..|::|:||:...::...|..|.||
plant   241 LKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKS 304

  Fly   181 ---------------------------------------------------------DHKGERHG 188
                                                                     |..|...|
plant   305 ERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKG 369

  Fly   189 SA---------AERLLAAQNPSTHADRPHQLFA---------DAPVQTMMPQMPGQIPAQMPGQM 235
            |.         |.|:|...|......:|  |:.         .|.:|....||.   ||.:||
plant   370 SGFVAFSAASEASRVLNEMNGKMVGGKP--LYVALAQRKEERRAKLQAQFSQMR---PAFIPG-- 427

  Fly   236 MPPPMMAPPPPVVPVSNNNMGM-----LAPPPPVPQPAPFPATIPPPPLPPMTGGQPPLPPAM-- 293
                 :.|..|:.......:|.     ..|||.:|....|             |.||.|.|.|
plant   428 -----VGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGF-------------GYQPQLVPGMRP 474

  Fly   294 ---GIPPPPRMMQPNAWAPPGMPAPPPRPPPTNWRPPPVPF---PPTPYARPY---QPDGYQY 347
               |.|    ||||....        |||........|:..   .|.||.:|.   :..||:|
plant   475 AFFGGP----MMQPGQQG--------PRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRY 525

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Spx	NP_511058.1	RRM1_SF3B4	15..88	CDD:409771	24/72 (33%)
		RRM2_SF3B4	99..181	CDD:409772	33/229 (14%)
PAB4	NP_179916.1	PABP-1234	47..631	CDD:130689	108/518 (21%)