DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spx and CG7903

DIOPT Version :10

Sequence 1:NP_511058.1 Gene:Spx / 31558 FlyBaseID:FBgn0015818 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster


Alignment Length:132 Identity:28/132 - (21%)
Similarity:53/132 - (40%) Gaps:40/132 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 LDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMD 160
            ::..|.:|:|:|.....|: |...|:.:|.:::...:.|         .||::..:.:.::||:.
  Fly     1 MNTTAKVFVGSLPRCKPEE-LRRLFTNYGSVVECDVMNR---------CAFVHLENTDMAEAAIA 55

  Fly   161 AMNGQYLCNRPISVSYAFKK--------------DHKGER----HGSAAERLLAAQNPSTHADRP 207
            |:||.....:||.|.....|              |:.|.|    .|..|::            ||
  Fly    56 ALNGTIFKGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADK------------RP 108

  Fly   208 HQ 209
            |:
  Fly   109 HE 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpxNP_511058.1 RRM1_SF3B4 15..88 CDD:409771
RRM2_SF3B4 99..181 CDD:409772 20/95 (21%)
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 17/73 (23%)
PABP-1234 <18..173 CDD:130689 24/115 (21%)
Blue background indicates that the domain is not in the aligned region.

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