DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spx and CG4806

DIOPT Version :10

Sequence 1:NP_511058.1 Gene:Spx / 31558 FlyBaseID:FBgn0015818 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster


Alignment Length:250 Identity:53/250 - (21%)
Similarity:94/250 - (37%) Gaps:93/250 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGI------KIMNMI----------KLYGKPIRVN 87
            ::|    :..|:...:|..||:|.::|.||..:      |:|:.:          ::..|..:.|
  Fly   260 IIN----RQAVSGHSKGTAFVKFKAKESADLCLQAGTEFKLMDEVLDPHPALSREEMKSKQSQEN 320

  Fly    88 K---------------------------------ASAHQ---------KNLD--VGAN-IFIGNL 107
            |                                 |..|:         |||:  |..| :.|.||
  Fly   321 KKDDAKDSRNLYLAREGLIMAGAKAADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNL 385

  Fly   108 DVEVD-EKLLYDTFSAFGVILQTPKIMRD----PE--TGKSKSFAFINFASFEASDAAMDAMNGQ 165
            ....| |||.....:..|......::||:    ||  .||||.|.|::|.:.:.:.||:..:|..
  Fly   386 PQNYDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNN 450

  Fly   166 ----YLCNRPISVSYAFK-------KDHKGERHGSAAERLLAAQNPSTHADRPHQ 209
                ...:||| |:::.:       |:.:.||         :.||..|:.::..:
  Fly   451 PNIFGTQSRPI-VAFSIEDRAVHKIKEKRTER---------SKQNNPTYQNKQQE 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpxNP_511058.1 RRM1_SF3B4 15..88 CDD:409771 12/64 (19%)
RRM2_SF3B4 99..181 CDD:409772 27/100 (27%)
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848
RRM3_Nop4p 229..312 CDD:410077 11/55 (20%)
RRM4_RBM28_like 379..468 CDD:409850 26/89 (29%)
PTZ00121 <473..>622 CDD:173412 6/31 (19%)
Blue background indicates that the domain is not in the aligned region.

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