DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spx and Rbp9

DIOPT Version :9

Sequence 1:NP_511058.1 Gene:Spx / 31558 FlyBaseID:FBgn0015818 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster


Alignment Length:203 Identity:64/203 - (31%)
Similarity:99/203 - (48%) Gaps:27/203 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPI 84
            |...:|:..:..|||..|.|.:..:.:|:||....|||||.::.:|||:..|..:|.::|..|.|
  Fly   117 LPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTI 181

  Fly    85 RVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINF 149
            :|:.|....:::. |||:::..|...:.:..|...||.:|.|: |.:|:.|..||.||...||.|
  Fly   182 KVSIARPSSESIK-GANLYVSGLPKNMTQSDLESLFSPYGKII-TSRILCDNITGLSKGVGFIRF 244

  Fly   150 -ASFEASDAAMDAMNGQYLCN--RPISVSYAFKKDHKGERHGSAAERLLAAQNPSTHADRPHQLF 211
             ..||| |.|:..:||....|  .||:|.:                    |.|||::.:....|.
  Fly   245 DQRFEA-DRAIKELNGTTPKNSTEPITVKF--------------------ANNPSSNKNSMQPLA 288

  Fly   212 A-DAPVQT 218
            | .||..|
  Fly   289 AYIAPQNT 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpxNP_511058.1 RRM1_SF3B4 15..88 CDD:240780 24/67 (36%)
RRM2_SF3B4 99..181 CDD:240781 30/84 (36%)
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 64/203 (32%)
RRM1_Hu 109..186 CDD:241094 24/68 (35%)
RRM2_Hu 196..274 CDD:241096 29/99 (29%)
RRM3_Hu 355..432 CDD:240823
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439635
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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