DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spx and RBM7

DIOPT Version :9

Sequence 1:NP_511058.1 Gene:Spx / 31558 FlyBaseID:FBgn0015818 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_001272974.1 Gene:RBM7 / 10179 HGNCID:9904 Length:267 Species:Homo sapiens


Alignment Length:233 Identity:65/233 - (27%)
Similarity:104/233 - (44%) Gaps:40/233 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 AERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGI 71
            |....|.|::.|.|:.||:|.||:|||.|||||:.|.:|||:..:..| :.||.|..|....|.:
Human     4 AAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAM 67

  Fly    72 KIMNMIKLYGKPIRV--NKASAHQKNLDVGANI---FIGNLD-VEVDEKLLY----DTFSAFGVI 126
            .::|.|||||:||::  ...|:|... ||..:.   .:||.. ........|    |..::...|
Human    68 NLLNGIKLYGRPIKIQFRSGSSHAPQ-DVSLSYPQHHVGNSSPTSTSPSSRYERTMDNMTSSAQI 131

  Fly   127 LQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMN-GQYLCNRPI----------SVSYAFKK 180
            :|  :....||          ||......::|:..|: |....:.|:          |.|::|.:
Human   132 IQ--RSFSSPE----------NFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQ 184

  Fly   181 DHKGE-RHGSAAERLLAAQNPSTH-ADRPH---QLFAD 213
            ....: |.|:.:.:.....|...: |||.:   |.:.|
Human   185 SSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTD 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpxNP_511058.1 RRM1_SF3B4 15..88 CDD:240780 33/74 (45%)
RRM2_SF3B4 99..181 CDD:240781 17/100 (17%)
RBM7NP_001272974.1 RRM <9..>84 CDD:223796 35/75 (47%)
RRM_RBM7 9..83 CDD:241036 35/74 (47%)
ZCCHC8 binding. /evidence=ECO:0000269|PubMed:27905398, ECO:0007744|PDB:5LXR, ECO:0007744|PDB:5LXY 25..35 7/9 (78%)
ZCCHC8 binding. /evidence=ECO:0000269|PubMed:27905398, ECO:0007744|PDB:5LXR, ECO:0007744|PDB:5LXY 59..76 5/16 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..267 12/60 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D491103at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

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