DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqh and Efcab11

DIOPT Version :9

Sequence 1:NP_001284928.1 Gene:sqh / 31554 FlyBaseID:FBgn0003514 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_084448.1 Gene:Efcab11 / 78767 MGIID:1926017 Length:162 Species:Mus musculus


Alignment Length:170 Identity:32/170 - (18%)
Similarity:66/170 - (38%) Gaps:23/170 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFVEKEDLHDMLASL-GKN 66
            :|..||..:.:::|                  ::.:.|...|::..|::.:||....:..| |..
Mouse     8 ARPRAGEASASERR------------------KWVKVFKACDEDNKGYLSREDFKVAIVMLFGYK 54

  Fly    67 PTDDYLDGMM---NEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENMGVLPEDRLREL 128
            |:....|.:|   |.....::...||:....:.:.....:.|:..|..||....|.|..:..:..
Mouse    55 PSKIEADAVMSSVNPNTSGVSLEGFLSAVKRKKEARLYRNEIRQIFTAFDVHYRGFLTLEDFKRA 119

  Fly   129 LTTMGDRFTDEDVDEMYREA-PIKNGLFDYLEFTRILKHG 167
            .:.:..:.....|.|::||| ...:|...:.:|...:.||
Mouse   120 FSRVAPKLPARTVLEVFREADQDSDGHVSFRDFEYAMNHG 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqhNP_001284928.1 FRQ1 15..170 CDD:227455 29/158 (18%)
Efcab11NP_084448.1 FRQ1 14..152 CDD:227455 26/155 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1435392at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.