DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqh and Myl12a

DIOPT Version :10

Sequence 1:NP_511057.1 Gene:sqh / 31554 FlyBaseID:FBgn0003514 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001344749.1 Gene:Myl12a / 67268 MGIID:1914518 Length:178 Species:Mus musculus


Alignment Length:174 Identity:139/174 - (79%)
Similarity:157/174 - (90%) Gaps:3/174 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFVEKEDLHDMLASLGK 65
            |||::  .:..|||||.|||||||||||||:||.||||||||||||||||::||||||||||:||
Mouse     7 MSSKR--AKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGK 69

  Fly    66 NPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENMGVLPEDRLRELLT 130
            ||||:|||.||||||||||||||||:|||:|.||||||||:|||.|||||.:|.:.||.||||||
Mouse    70 NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEAIGTIQEDYLRELLT 134

  Fly   131 TMGDRFTDEDVDEMYREAPI-KNGLFDYLEFTRILKHGAKDKDE 173
            |||||||||:|||:|||||| |.|.|:|:||||||||||||||:
Mouse   135 TMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqhNP_511057.1 PTZ00184 27..164 CDD:185504 112/137 (82%)
Myl12aNP_001344749.1 PTZ00184 31..169 CDD:185504 112/137 (82%)

Return to query results.
Submit another query.