DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqh and efcab11

DIOPT Version :9

Sequence 1:NP_001284928.1 Gene:sqh / 31554 FlyBaseID:FBgn0003514 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001017812.1 Gene:efcab11 / 550510 ZFINID:ZDB-GENE-050417-348 Length:167 Species:Danio rerio


Alignment Length:169 Identity:35/169 - (20%)
Similarity:69/169 - (40%) Gaps:19/169 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 TAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFVEKEDLHDMLASL-----GK 65
            |.||....:::           .:.|:..:.:..|:..|.::.|::.:|||...:..|     .|
Zfish     3 TTGRSFRNERQ-----------INDAERKKIELVFHQCDVDKKGYMSREDLKIAVVMLFGYKPSK 56

  Fly    66 NPTDDYLD-GMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENMGVLPEDRLRELL 129
            :.|:..:: |.:.:..| :....|.||...::...||.:..:..|..||....|.|..|..:...
Zfish    57 SETNILMENGTIRDCKG-VPLEPFATLMRRKMSAEDPYEKARQIFSAFDVHCRGFLKLDDFKSAF 120

  Fly   130 TTMGDRFTDEDVDEMYREA-PIKNGLFDYLEFTRILKHG 167
            ..:..|..:..|.|.:|.| ...:|...:.:|..|:.:|
Zfish   121 KRVAPRLQERTVLEAFRHADQDSDGHISFKDFENIISYG 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqhNP_001284928.1 FRQ1 15..170 CDD:227455 32/160 (20%)
efcab11NP_001017812.1 PTZ00183 9..156 CDD:185503 30/158 (19%)
EFh 95..152 CDD:238008 12/56 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1435392at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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