DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqh and myl9a

DIOPT Version :9

Sequence 1:NP_001284928.1 Gene:sqh / 31554 FlyBaseID:FBgn0003514 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001006027.1 Gene:myl9a / 450006 ZFINID:ZDB-GENE-041010-120 Length:174 Species:Danio rerio


Alignment Length:174 Identity:136/174 - (78%)
Similarity:157/174 - (90%) Gaps:2/174 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFVEKEDLHDMLASLGK 65
            ||:.|.| :..||:||.|||||||||||||:||.||||||||||||||||::|||||||||||||
Zfish     1 MSAAKRA-KGKTTRKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK 64

  Fly    66 NPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENMGVLPEDRLRELLT 130
            ||:|:||:|||:|||||||||||||:|||||.||||||||:|||.||||:..|.:.||.||:|||
Zfish    65 NPSDEYLEGMMSEAPGPINFTMFLTMFGERLNGTDPEDVIRNAFTCFDEDATGFIHEDHLRDLLT 129

  Fly   131 TMGDRFTDEDVDEMYREAPI-KNGLFDYLEFTRILKHGAKDKDE 173
            |||||||||:|||::||||| |.|.|:|:||||||||||||||:
Zfish   130 TMGDRFTDEEVDELFREAPIDKKGNFNYVEFTRILKHGAKDKDD 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqhNP_001284928.1 FRQ1 15..170 CDD:227455 126/155 (81%)
myl9aNP_001006027.1 FRQ1 20..170 CDD:227455 121/149 (81%)
EFh 34..>78 CDD:238008 37/43 (86%)
EFh 104..165 CDD:298682 42/60 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592104
Domainoid 1 1.000 63 1.000 Domainoid score I10226
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 288 1.000 Inparanoid score I2809
OMA 1 1.010 - - QHG51980
OrthoDB 1 1.010 - - D1435392at2759
OrthoFinder 1 1.000 - - FOG0000218
OrthoInspector 1 1.000 - - otm25265
orthoMCL 1 0.900 - - OOG6_103056
Panther 1 1.100 - - O PTHR23049
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X162
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.870

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