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Protein Alignment sqh and Myl2
DIOPT Version :9
Sequence 1: | NP_001284928.1 |
Gene: | sqh / 31554 |
FlyBaseID: | FBgn0003514 |
Length: | 174 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001030329.2 |
Gene: | Myl2 / 363925 |
RGDID: | 1564245 |
Length: | 166 |
Species: | Rattus norvegicus |
Alignment Length: | 174 |
Identity: | 87/174 - (50%) |
Similarity: | 118/174 - (67%) |
Gaps: | 10/174 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFVEKEDLHDMLASLGK 65
||.:| .|||.:..:||||:||:|.||.||||||.::|||||||::|.||.|..|:||:
Rat 1 MSPKK-------AKKRLEGGSSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGR 58
Fly 66 -NPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENMGVLPEDRLRELL 129
|..::.:|.|:.|||||||||:|||:|||:|:|.|||:.|.|||..||.|..|.|..|.:||:|
Rat 59 VNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGSLKADYVREML 123
Fly 130 TTMGDRFTDEDVDEMYRE-APIKNGLFDYLEFTRILKHGAKDKD 172
||..:||:.|::|:|:.. .|...|..||.....|:.|| ::||
Rat 124 TTQAERFSKEEIDQMFAAFPPDVTGNLDYKNLVHIITHG-EEKD 166
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
sqh | NP_001284928.1 |
FRQ1 |
15..170 |
CDD:227455 |
81/156 (52%) |
Myl2 | NP_001030329.2 |
FRQ1 |
14..163 |
CDD:227455 |
79/149 (53%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1435392at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000218 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
1 |
1.100 |
- |
- |
O |
PTHR23049 |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
1 |
1.000 |
- |
- |
|
X162 |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
6 | 6.020 |
|
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