DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqh and Mylpf

DIOPT Version :9

Sequence 1:NP_001284928.1 Gene:sqh / 31554 FlyBaseID:FBgn0003514 Length:174 Species:Drosophila melanogaster
Sequence 2:XP_038953516.1 Gene:Mylpf / 24584 RGDID:3141 Length:191 Species:Rattus norvegicus


Alignment Length:193 Identity:92/193 - (47%)
Similarity:116/193 - (60%) Gaps:30/193 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFVEKEDLHDMLASLGK-NPT 68
            |.|.|||     |...:||||:||||.||.||||||.:|||||||.::||||.|..|::|: |..
  Rat     4 KKAKRRA-----AAEGSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVK 63

  Fly    69 DDYLDGMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENMGVLPEDRLRELLTTMG 133
            ::.||.||.||.||||||:|||:|||:|:|.||||||..||...|.|..|.:.:..|.|||||..
  Rat    64 NEELDAMMKEASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQC 128

  Fly   134 DRFTDEDV---------DEMYREAP----IKN----------GLFDYLEFTRILKHG-AKDKD 172
            |||:.|:|         |..::..|    |||          |..||.....::.|| |||::
  Rat   129 DRFSQEEVSRGEPREEKDSEWKPTPVFLQIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqhNP_001284928.1 FRQ1 15..170 CDD:227455 85/179 (47%)
MylpfXP_038953516.1 FRQ1 15..136 CDD:227455 72/120 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0031
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1435392at2759
OrthoFinder 1 1.000 - - FOG0000218
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23049
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X162
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.920

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