DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqh and Pvalb

DIOPT Version :9

Sequence 1:NP_001284928.1 Gene:sqh / 31554 FlyBaseID:FBgn0003514 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001317615.1 Gene:Pvalb / 19293 MGIID:97821 Length:110 Species:Mus musculus


Alignment Length:67 Identity:18/67 - (26%)
Similarity:31/67 - (46%) Gaps:7/67 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 EFKEAFNMIDQNRDGFVEKEDLHDML-------ASLGKNPTDDYLDGMMNEAPGPINFTMFLTLF 92
            |.|:.|:::|:::.||:|:::|..:|       ..|....|...|.....:..|.|....|.||.
Mouse    43 EVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLLAAGDKDGDGKIGVEEFSTLV 107

  Fly    93 GE 94
            .|
Mouse   108 AE 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqhNP_001284928.1 FRQ1 15..170 CDD:227455 18/67 (27%)
PvalbNP_001317615.1 EFh_parvalbumin_alpha 9..109 CDD:319997 17/65 (26%)
EF-hand motif 9..38 CDD:319997
EF-hand motif 43..72 CDD:319997 9/28 (32%)
EF-hand motif 82..109 CDD:319997 7/26 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1435392at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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