DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqh and myl2

DIOPT Version :10

Sequence 1:NP_511057.1 Gene:sqh / 31554 FlyBaseID:FBgn0003514 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001107717.1 Gene:myl2 / 100135705 XenbaseID:XB-GENE-482091 Length:167 Species:Xenopus tropicalis


Alignment Length:175 Identity:89/175 - (50%)
Similarity:121/175 - (69%) Gaps:10/175 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFVEKEDLHDMLASLGK 65
            ||.:|       .||||:.|.||||:||:|.||.||||||.::|||||||::||||.|..|:||:
 Frog     1 MSPKK-------AKKRAEGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKEDLRDTFAALGR 58

  Fly    66 -NPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENMGVLPEDRLRELL 129
             |..::.|:.|:.|||||||||:|||:|||:|:|.|||:.|.|||..||.|..|:|..:.:||:|
 Frog    59 LNVKNEELEEMLKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGTGLLKSEYIREML 123

  Fly   130 TTMGDRFTDEDVDEMYRE-APIKNGLFDYLEFTRILKHGAKDKDE 173
            .|..:|||.|:||:|:.. .|...|..:|.....|:.|| ::|:|
 Frog   124 MTQAERFTSEEVDQMFTAFPPDVTGNLNYKNLVHIITHG-EEKEE 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqhNP_511057.1 PTZ00184 27..164 CDD:185504 72/138 (52%)
myl2NP_001107717.1 PTZ00184 20..160 CDD:185504 73/139 (53%)

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