DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ca-alpha1T and tpcn1

DIOPT Version :9

Sequence 1:NP_001259267.1 Gene:Ca-alpha1T / 31550 FlyBaseID:FBgn0264386 Length:3218 Species:Drosophila melanogaster
Sequence 2:XP_695923.4 Gene:tpcn1 / 567534 ZFINID:ZDB-GENE-060526-199 Length:811 Species:Danio rerio


Alignment Length:739 Identity:143/739 - (19%)
Similarity:286/739 - (38%) Gaps:204/739 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  2144 KHFTTEREDYSL--YIFPEDNRFRQICTWFVNQKWFDNVVLLFIALNCITLAMERPNIPPSSTER 2206
            |.||..|..::|  |:|...:.|..:       :....|:|:.::|:      |.|.:|....:.
Zfish    83 KFFTHPRSAHALSAYLFAHSHLFYVV-------ELLTAVLLMLLSLS------EAPAVPFLRLDV 134

  Fly  2207 LFLATANYVFTVVFTVEMFIKVVATGMFYGHDAYFTSGWNIMDGSLVTISIIDLLMSLISESSPR 2271
            ...||...:..|:...|:.:|:    .:.|...:......::..|::.|..|:.::.|:.::|. 
Zfish   135 YVHATLELLALVMVAFELCMKL----RWLGFHTFIRHKRTMVKTSVLFIQFIEAIVVLVRQTSH- 194

  Fly  2272 IFGILRVFRLLRSLRPLRVIN-RAPG-LKLVVQTLLSSLRPIGNIVLICCTFFIIFGILGVQLFK 2334
                   .|:.|:|||:.::: |..| ::..::.:..||.|..:|:|:...|.:||.|||..|| 
Zfish   195 -------LRVTRALRPIFLVDCRYCGAVRRNLRQIFQSLPPFIDILLLLLFFMVIFAILGFCLF- 251

  Fly  2335 GTFYYCEGENIKGVRNADECRRIPGNVWTNRKYNFDDLGKALMSLFVLSSRDGWVNIMYTGLDAV 2399
                        ....||              :.|..|..:::|||||.:...:.::|       
Zfish   252 ------------SANTAD--------------HYFSTLENSIVSLFVLLTTANFPDVM------- 283

  Fly  2400 GVDQQPIVNYNEWRLLYFIAFILLVGFFVLNMFVGVVVENFHRCREEQEKEEKI--RRAAKRALQ 2462
                .|..:.|.|..::||.::.:..:|::|:.:.||.:.|:...:.:.|...:  |.|.:.|.|
Zfish   284 ----MPAYSKNRWSCIFFIVYLSIELYFIMNLLLAVVFDTFNGVEKMKFKSLLLHKRSAIEHAFQ 344

  Fly  2463 MEKKRRRMHEPP-------------YYTNYSPTRMF----------------------------- 2485
            :...|:|   |.             |:...:|...|                             
Zfish   345 LLVSRQR---PDGVSLKQFDGLMRFYHPRMTPRDRFLTFKALNHSGAPMLSLQDFYKFYEVIGLK 406

  Fly  2486 ------------------------VHNVVTSKYFDLAIAAVIGLNVVTMAMEYYKMPSGLKYALK 2526
                                    ::.:|.||.|..|:..|:.:|.:.:.:|...:..|:.:...
Zfish   407 WKARRSGEHWFDDLPRTALLIFKGINLLVKSKAFQYAMYLVVAVNGIWILVETNMLNDGISWTRV 471

  Fly  2527 I-FNY-FFTAVFILEANMKLVALGWKLYLKDRWNQLDVGIVLLSIVGIVLEELETNTHQIIPINP 2589
            : ::| .|..::.:|..:|:..||...|....||..|..:.:.:.:|::....:......|.   
Zfish   472 VPWSYIIFLTIYGIEVLLKITGLGPITYFSSGWNLFDFSVTVFAFLGLIALAFDMEPFYFIV--- 533

  Fly  2590 TIIRVMRVLRIARVLKLLKMANGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRL-- 2652
                   |||..::|:|.|:....|.:|||:.:..|::.:|||...:.::.||.:|:|.|..:  
Zfish   534 -------VLRPLQLLRLFKIKQRYRNVLDTMFELFPRMASLGLTLIIFYYSFAIVGMEFFADVIY 591

  Fly  2653 -ECSDEIPC------------------QGLGEHAHFANFGMAFLTLFRVATGDNW----NGIMKD 2694
             .|.|....                  :|.....:|.|...:|:|||.:...:||    .|:...
Zfish   592 PNCCDNSTVAASYRQINVTTGNRTELQEGYYYLNNFNNILSSFVTLFELTVVNNWYITMEGVTSQ 656

  Fly  2695 TLRDNCDDAADCVRNCCVSSVIAPIFFVIFVLMAQFVLVNVVVAVL------MKHLEESHKQMED 2753
            |..                  .:.::|:.|.::...|:..:|..:|      |.:..::.:.::|
Zfish   657 TTH------------------WSRLYFMTFYIVTMVVMTIIVAFILDAFVFRMNYSRKNREPLDD 703

  Fly  2754 ELDMEVELERELVREQEFAQEQKL 2777
            ..|     |:.:|.|.|.:|.:.|
Zfish   704 PED-----EKGIVFETEVSQTEAL 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-alpha1TNP_001259267.1 Ion_trans 332..636 CDD:278921
Ion_trans 1261..1495 CDD:278921
Ion_trans 2192..2448 CDD:278921 54/257 (21%)
Ion_trans 2510..2728 CDD:278921 48/244 (20%)
tpcn1XP_695923.4 Ion_trans 139..325 CDD:278921 50/235 (21%)
Ion_trans 477..688 CDD:278921 48/238 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2301
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.