DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ca-alpha1T and Tpcn2

DIOPT Version :9

Sequence 1:NP_001259267.1 Gene:Ca-alpha1T / 31550 FlyBaseID:FBgn0264386 Length:3218 Species:Drosophila melanogaster
Sequence 2:XP_038935131.1 Gene:Tpcn2 / 309139 RGDID:1311779 Length:867 Species:Rattus norvegicus


Alignment Length:934 Identity:162/934 - (17%)
Similarity:317/934 - (33%) Gaps:368/934 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly  2126 GGGERYS--KLKMLIEQLTPKHFTTEREDYSLYIFPEDN-RFRQI-------CTWFVNQKW-FDN 2179
            |||:.:|  ..::.|:|..              :|.||. ::|.|       ..|.  .:| :.|
  Rat    14 GGGQAHSGADQELCIDQAV--------------VFIEDAIKYRSIYHRLDAGSLWL--YRWYYSN 62

  Fly  2180 V--------VLLFIALNCITLA-----------MERPNIPPSS-TERLFLATANYVFTVVFTVEM 2224
            |        :.|.:||..:.:.           ..:|..||.. ||     |...:..:||..::
  Rat    63 VCQRVLGFTIFLILALAFVEVPSSFTRTADVRYRSQPWQPPCGLTE-----TIEALCLLVFLADL 122

  Fly  2225 FIKVVATGMFYGHDAYFTSGWNIMDGSLVTISIIDLLMSL---ISESSPRIFGILRVFRLLRSLR 2286
            .:|    |...|......:.|.:....::.:|::|.::||   ..||       |||.||   ||
  Rat   123 SVK----GYLVGQAQLQQNLWLLAYFVVLVVSVVDWIVSLSLNCEES-------LRVRRL---LR 173

  Fly  2287 PLRVINRAPGLKLVVQTLLSSLRPIGNIVLICCTFFIIFGILGVQLFKGTFYYCEGENIKGVRNA 2351
            |..::..:..:|..::.:..||..:.::.|:......:|.::|:.||.             :...
  Rat   174 PFFLLQNSSMMKKTLKCIRWSLPEMASVGLLLTIHLCLFTVIGMLLFT-------------IAEK 225

  Fly  2352 DECRRIPGNVWTNRKYNFDDLGKALMSLFVLSSRDGWVNIMYTGLDAVGVDQQPIVNYNEWRLLY 2416
            ||.:.      ..|...|.:|.:||.||.||.:.....::|.           |....|....|:
  Rat   226 DEAQN------KERLTYFRNLPEALTSLLVLLTTSNNPDVMI-----------PAYTQNRAYALF 273

  Fly  2417 FIAFILLVGFFVLNM-----------------------------------------------FVG 2434
            ||.|.|:...|::|:                                               .||
  Rat   274 FIIFTLIGSLFLMNLLTAIIYNQFRGYLMKSLQTSLFRRRLGARAAYEVLTLQAGPNGTTSELVG 338

  Fly  2435 VVVENFHRCREEQEKEEKIRRAAKRAL----------------------QMEK--KRRRMHEPPY 2475
            |..|||.|..::.:    :.:..|:|:                      :::|  .:.|..:|.|
  Rat   339 VNPENFLRVLQKTQ----LNKIHKQAIIQKVHSYEGRPILADEFQKLFDEVDKGIVKERPPKPQY 399

  Fly  2476 YTNYSPTRMFVHNVVTSKYFD-----LAIAAVI-------GLNVVTMAME-----------YYKM 2517
            .:.:..|..|   :.:.:|||     :|:..::       ||.......|           :..:
  Rat   400 QSPFLQTAQF---IFSHRYFDYLGNLIALGNLLSICVPGAGLKPAAWGTERLCPGDSQLHFHLVL 461

  Fly  2518 PSGLKY--------ALKI----------------FNYFFTA-VFILEANMKLVALG----W---- 2549
            |:|...        .|.:                |..|::. |.|....|:|.:.|    |    
  Rat   462 PAGAAVQGVRAGPTGLPVLPQQRVRWPPDHHPAGFGDFYSGRVPIAAPRMELSSAGLPRSWALTT 526

  Fly  2550 ----KLY-LKDR----------------WNQL-------DVGIVLLSI---------VGIVLEE- 2576
                ||: ..:|                | ||       .|.:.:||:         |.:|:.. 
  Rat   527 ISAFKLWGCSERCGPGCGRCGCDCGRYDW-QLGALAVLGSVAMTVLSVAVAVLGGMMVAVVMAAW 590

  Fly  2577 --------LETNTH-----------------------QIIP-INPTII----------------- 2592
                    |.:.:|                       .:.| .:|.::                 
  Rat   591 ALGMSRVWLGSVSHLLGAFSAWCPYSDYCCLVTPAASSLSPSASPNLVTRLRYLLRKPEQYGPLS 655

  Fly  2593 -----RVMRVLRIARVLKLLKMANGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELF--- 2649
                 |::.:|.:.|.|:::........:..|::..:..:...|.:..:::::||.:|:.||   
  Rat   656 LWDMTRLVNILIVIRFLRIIPSIKPTAVVASTILGLIQNLRAFGGILVVVYYVFAMIGINLFRGV 720

  Fly  2650 -------GRLECSDEIPCQGLGEHAHFAN----FGMAFLTLFRVATGDNWNGIMKDTLRDNCDDA 2703
                   ..:..:...||....:..::.|    |..|.:||:.|...:||..|::....      
  Rat   721 IVPPGNSSLVPDNSSAPCGSFEQLGYWPNNFDDFAAALITLWDVMVVNNWQVILEAYKH------ 779

  Fly  2704 ADCVRNCCVSSVIAPIFFVIFVLMAQFVLVNVVVAVLMKHL-----EESHKQM-----EDELDME 2758
                    .|...:.::||::.|::..:.:|:.:|:|:::.     .:.|||:     :...:|.
  Rat   780 --------YSGPWSMVYFVLWWLVSSVIWINLFLALLLENFLHRWDPQGHKQLLVGTKQITYEMS 836

  Fly  2759 VELE-RELVREQEFAQEQKLCQQL 2781
            |||. |:::.|   .:|::|.::|
  Rat   837 VELMFRDILEE---PKEEELMEKL 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-alpha1TNP_001259267.1 Ion_trans 332..636 CDD:278921
Ion_trans 1261..1495 CDD:278921
Ion_trans 2192..2448 CDD:278921 62/317 (20%)
Ion_trans 2510..2728 CDD:278921 53/367 (14%)
Tpcn2XP_038935131.1 Ion_trans 66..297 CDD:395416 58/279 (21%)
Ion_trans <661..812 CDD:395416 29/164 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2301
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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