Sequence 1: | NP_001259267.1 | Gene: | Ca-alpha1T / 31550 | FlyBaseID: | FBgn0264386 | Length: | 3218 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_058943.2 | Gene: | Scn10a / 29571 | RGDID: | 3629 | Length: | 1956 | Species: | Rattus norvegicus |
Alignment Length: | 2762 | Identity: | 551/2762 - (19%) |
---|---|---|---|
Similarity: | 927/2762 - (33%) | Gaps: | 1096/2762 - (39%) |
- Green bases have known domain annotations that are detailed below.
Fly 282 RALTQYTRPRNWCLMLIT--------------NPWFERVSILVILLNCITLGMYQPCVDDACVTN 332
Fly 333 RC---KILQIFDDIIFAFFALEMTIKMVAMGIC-GKNTYLADSWNRLDFFIVLAGLLEYV-MHVE 392
Fly 393 NLNLTAIRTIRVLRPLRAINRIPSMRILVMLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWEGIL 457
Fly 458 RQRCSLMRTEGMVYPLTVPEVYRVRVRVNSLSQYYEFSKDQDYICSTPNDSGMHLCGN------F 516
Fly 517 PPYRIGSLVCNEEAKLFDFNEPTNTSCVNWNQYYTTCKQSGENPFQGTISFDNIGMAWVAIFLVI 581
Fly 582 SLEGWTDIMYYVQDAHSFWDWIYFVLLIVIGSFFMINLCLVVIATQFSETKKREMERMRQERARY 646
Fly 647 TSTSTLASSTNNSEPATCYAEIVKYIAHLWRRFKRRMLKKYR--LYKYQRQQRKEGLLPNADNLT 709
Fly 710 FSPSRIKCHHPKCPKYSNRKPSSIQDQMITVMVPLNSASNNINNNNNNNSNSSNHNGSGNHTAAG 774
Fly 775 GGNNNNNNNNNNAASCTTVALVNGINGSAASVTMSSAHHQQHQLLQHQQQQHQNQQQQQQQQQHS 839
Fly 840 SSDNTEQSLAPDGLPRSSSLKKSTAHHQLKPEGSAAEQKTILLKFPQQMIDSEQLILQLGNLGKS 904
Fly 905 HPCTSGFLSPPTSASRRPSVMFNEYVLLHTPPALNADPATAGTTTTVAPTVATVAGTAAAAAAAA 969
Fly 970 ATGSGSGNNNHQNGGASGGAGTGGTTEKSNIFSTEKMTQAGDGSIWQVNLPQTIGTIANP---YA 1031
Fly 1032 DCSELGIHDAMTCQELLAFSVAFSAALPTGQSTLESFYTSLARCDPHTAEALRAHHKPRSVPTGQ 1096
Fly 1097 NQTTPGAEGATVMVASTAGDTGQTLQPSTVSAVVGGTIDSHAANHRRKEHHQQSHHHHNNNNTTS 1161
Fly 1162 HSRNYRSRQGQGNSRMREPRAPTGNYMEDYACCYDLYQNALSPLDERPRQRSPTTRCLIS----- 1221
Fly 1222 -VYRCMSRVCSWIRRY---IRRLVEHKYFQQGILLAILINTLSMGIEYHNQPPELTAIVETSNVV 1282
Fly 1283 FSGIFAVEMLLKVVAEGPFRYIANGFNVFDGIIVILSAIEICQTFMGNGTGGGGSGLSVLRTFRL 1347
Fly 1348 LRILKLVRFMPNLRRQLFVMLRTMDNVAVFFSLLVLFIFIFSILGMYLFGGKFCKFLDESGLERE 1412
Fly 1413 CTCPEIISRHPQCECD----------RKHFNNILWATVTVFQILTQEDWNVVLFNGMEKTSHWAA 1467
Fly 1468 L-YFVALMTFGNYVLFNLLVAILVEGFSSERNERREREQRELVKKLREETLAENYSDGMYDESRS 1531
Fly 1532 EADSSTTNDSYYEVRNRWRSAEDVRKLQDSVELIIEAKSNMHRQRLLQPTHDYQINELPASSAAP 1596
Fly 1597 SASGTSGASAPGDRERDRDRDRDRERDRDRDRERDREAGGGGKEEGAQHAKPRGGLKKTYSIKER 1661
Fly 1662 RSEAPRLSKIRLARDPPIITTTA----ATPQDSPSTTLEPGMSFRQWGDMEPPSPPSP-----SL 1717
Fly 1718 LRPPNIFTG-----GQRSLDEGIPSIDLIPPSPVLSHKPLNILNASQLGVGMGGGVPSTAGSSSS 1777
Fly 1778 MHSVIIDDISKSSSSTAAATPIYVPTISSTADAQSQSHSLNDVSVGSSPGGEIPATGMSRNANTG 1842
Fly 1843 ASTSGSSSSERLPLAPPPQQGSFKQRLRRGSSKKRRASALALATDDNPARRTLDNQARRTQDEEE 1907
Fly 1908 EQQQLNNGGDNSCLLRNSNAVVSGSSSGTKETNRLSPQNSIRRLSNTLSIGSGPVGSRRASACIF 1972
Fly 1973 NSQVYQNLNQPPKLRPGSGQRRMSSIELAFSKTSHLNLHNLEANRKSLSYTNSKMDLDKWNKSYG 2037
Fly 2038 NLNEPDNMLQQYMEARDKRKNSISHYNLKKRLEEKELQQLQQLHQQQLLQQRQDSFSSTTQQQQQ 2102
Fly 2103 QLQQHRLSKDQQQLAMQPHSMVPGGGERYSKLKMLIEQLTPKHFTTEREDYSLYIFPEDNRFRQI 2167
Fly 2168 CTWFVNQKWFDNVVLLFIALNCITLAMERPNIPPSSTERLFLATANYVFTVVFTVEMFIKVVATG 2232
Fly 2233 MFYGHDAYFTSGWNIMDGSLVTISIIDLLMSLISESSPRIFGILRVFRLLRSLRPLRVINRAPGL 2297
Fly 2298 KLVVQTLLSSLRPIGNIVLICCTFFIIFGILGVQLFKGTFYYC--------EGENIKGVRNADEC 2354
Fly 2355 --RRIPGN-VWTNRKYNFDDLGKALMSLFVLSSRDGWVNIMYTGLDAVGVDQQPIVNYNEWRLLY 2416
Fly 2417 FIAFILLVGFFVLNMFVGVVVENFHRCREE--------QEKEEKIRRAAKRALQMEKKRRRMHEP 2473
Fly 2474 PYYTNYSPTRMFVHNVVTSKYFDLAIAAVIGLNVVTMAMEYYKMPSGLKYALKIFNYFFTAVFIL 2538
Fly 2539 EANMKLVALGWKLYLKDRWNQLDVGIVLLSIVGI----VLEELETNTHQIIPINPTIIRVMRVLR 2599
Fly 2600 IARVLKLLKMANGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEIPCQGLG 2664
Fly 2665 EHAHFANFGMAFLTLFRVATGDNWNGIMKDTLRDN---CD---DAADCVRNCCVSSVIAPIFFVI 2723
Fly 2724 FVLMAQFVLVNVVVAVLMKHL----EESHKQM-EDELDMEVELERELVRE-QEFAQEQKLCQQLA 2782
Fly 2783 EAQSKAAAPPRPLAKV---KSLP-----------------KNFIYSTPSLD-------KKFPAV- 2819
Fly 2820 ------------------------------SGVNNPSLTSSAATNLNQVATAGSGGAA-PG---- 2849
Fly 2850 AVPAGSGAGPRRQTVQYFQQPP--QSMLGGLS 2879 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ca-alpha1T | NP_001259267.1 | Ion_trans | 332..636 | CDD:278921 | 85/314 (27%) |
Ion_trans | 1261..1495 | CDD:278921 | 65/244 (27%) | ||
Ion_trans | 2192..2448 | CDD:278921 | 91/274 (33%) | ||
Ion_trans | 2510..2728 | CDD:278921 | 75/227 (33%) | ||
Scn10a | NP_058943.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 31..54 | ||
I. /evidence=ECO:0000305 | 116..404 | 93/372 (25%) | |||
Ion_trans | 129..406 | CDD:395416 | 94/361 (26%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 441..484 | 7/116 (6%) | |||
Na_trans_cytopl | <482..614 | CDD:403218 | 44/332 (13%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 537..581 | 16/109 (15%) | |||
II. /evidence=ECO:0000305 | 646..910 | 80/378 (21%) | |||
Ion_trans | 663..893 | CDD:395416 | 69/261 (26%) | ||
Na_trans_assoc | 903..1148 | CDD:399489 | 70/600 (12%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1008..1094 | 28/210 (13%) | |||
III. /evidence=ECO:0000305 | 1141..1450 | 103/380 (27%) | |||
Ion_trans | 1152..1428 | CDD:395416 | 95/282 (34%) | ||
Na_channel_gate | 1420..1472 | CDD:240441 | 11/57 (19%) | ||
IV. /evidence=ECO:0000305 | 1459..1758 | 100/315 (32%) | |||
Ion_trans | 1476..1733 | CDD:395416 | 87/268 (32%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1906..1956 | 7/23 (30%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D172471at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |