DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ca-alpha1T and Tpcn2

DIOPT Version :9

Sequence 1:NP_001259267.1 Gene:Ca-alpha1T / 31550 FlyBaseID:FBgn0264386 Length:3218 Species:Drosophila melanogaster
Sequence 2:XP_006508676.1 Gene:Tpcn2 / 233979 MGIID:2385297 Length:769 Species:Mus musculus


Alignment Length:803 Identity:152/803 - (18%)
Similarity:289/803 - (35%) Gaps:256/803 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  2157 IFPEDN-RFRQI-------CTWFVNQKW-FDNV---VLLFIALNCITLAM--------------- 2194
            :|.||. ::|.|       ..|.  .:| :.||   ||.||....:.||.               
Mouse    35 VFIEDAIKYRSIYHRMDAGSLWL--YRWYYSNVCQRVLGFIIFLILILAFVEVPSSFTKTADVRY 97

  Fly  2195 -ERPNIPPSS-TERLFLATANYVFTVVFTVEMFIKVVATGMFYGHDAYFTSGWNIMDGSLVTISI 2257
             .:|..||.. ||     |......:.|.|::.:|    |...|......:.|.:....::.:|:
Mouse    98 RSQPWQPPCGLTE-----TIEAFCLLAFLVDLSVK----GYLVGQAQLQQNLWLLAYFMVLVVSV 153

  Fly  2258 IDLLMSL-ISESSPRIFGILRVFRLLRSLRPLRVINRAPGLKLVVQTLLSSLRPIGNIVLICCTF 2321
            :|.::|| ::...|        .|:.|.|||..::..:..:|..::.:..||..:.::.|:....
Mouse   154 VDWIVSLSLACEEP--------LRMRRLLRPFFLLQNSSMMKKTLKCIRWSLPEMASVGLLLAIH 210

  Fly  2322 FIIFGILGVQLFKGTFYYCEGENIKGVRNADECRRIPGNVWTNRKYNFDDLGKALMSLFVLSSRD 2386
            ..:|.|:|:.||.             :...||.:.      ..|...|.:|.:||.||.||.:..
Mouse   211 LCLFTIIGMLLFT-------------IGEKDEAQD------QERLAYFRNLPEALTSLLVLLTTS 256

  Fly  2387 GWVNIMYTGLDAVGVDQQPIVNYNEWRLLYFIAFILLVGFFVLNMFVGVVVENF----------- 2440
            ...::|.           |....|....|:||.|.|:...|::|:...::...|           
Mouse   257 NNPDVMI-----------PAYTQNRAFALFFIVFTLIGSLFLMNLLTAIIYNQFRGYLMKSLQTS 310

  Fly  2441 -------------------------------------------------------------HRCR 2444
                                                                         |.|.
Mouse   311 LFRRRLGARAAYEVLASRAGPAGTTPEFPCWPAPDWIFHRELYGLPSPQCFHYPVCSFLLAHLCL 375

  Fly  2445 EEQEKEE---------KIRRAAKRALQMEK-------------------------KRRRMHEPPY 2475
            ......|         ::.:..|:|: |:|                         .:.|..:|.|
Mouse   376 RVGVNPETFLPVLQKTQLNKTHKQAI-MQKVQSYEGRPMLADEFQKLFDEVDKGLAKERPLKPQY 439

  Fly  2476 YTNYSPTRMFVHNVVTSKYFDLAIAAVIGLNVVTMAMEYYKMPSGL------KYALKIFNYFFTA 2534
            .:.:..|..|   :.:..|||. :..::.|..:.....:..:.|.|      .:.|.|.:|.|..
Mouse   440 QSPFLQTAQF---IFSHHYFDY-LGNLVALGNLLSICVFLVLDSDLLPGERDDFVLGILDYIFIL 500

  Fly  2535 VFILEANMKLVALGWKLYLKDRWNQLDVGIVLLSIVGIVLEELET-----------NTHQIIPIN 2588
            .::||...|:.|||...||....|..|   .||:|: :::.|:.|           ...|..|::
Mouse   501 YYLLELLFKVFALGLPGYLSYHSNVFD---GLLTII-LLVSEICTLAVYRLPHSGWKPEQYGPLS 561

  Fly  2589 P-TIIRVMRVLRIARVLKLLKMANGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELF--- 2649
            . .:.|:|..|.:.|.|:::.....:..:.:|::..:|.:...|.:..:.:::||.:|:.||   
Mouse   562 LWDMTRLMNTLIVFRFLRIIPNIKPMAEVANTILGLIPNLRAFGGILVVAYYVFAMIGINLFRGV 626

  Fly  2650 ----GRLECSDEIP------CQGLGEHAHFAN----FGMAFLTLFRVATGDNWNGIMKDTLRDNC 2700
                |.   |..:|      |....:..::.|    |..|.:||:.|...:||..|::...|   
Mouse   627 IVPPGN---SSLVPDNNSAVCGSFEQLGYWPNNFDDFAAALITLWNVMVVNNWQVILEAYKR--- 685

  Fly  2701 DDAADCVRNCCVSSVIAPIFFVIFVLMAQFVLVNVVVAVLMKHL-----EESHKQ-MEDELDMEV 2759
                       .:...:.::||::.|::..:.:|:.:|:|:::.     .:.||| :.....|.|
Mouse   686 -----------YAGPWSMVYFVLWWLVSSVIWINLFLALLLENFLHRWDPQGHKQLLVGTKQMSV 739

  Fly  2760 ELE-RELVREQEFAQEQKLCQQL 2781
            ||. |:::.|   .:|::|.::|
Mouse   740 ELMFRDILEE---PKEEELMEKL 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-alpha1TNP_001259267.1 Ion_trans 332..636 CDD:278921
Ion_trans 1261..1495 CDD:278921
Ion_trans 2192..2448 CDD:278921 57/345 (17%)
Ion_trans 2510..2728 CDD:278921 53/252 (21%)
Tpcn2XP_006508676.1 Ion_trans 68..299 CDD:366146 58/277 (21%)
Ion_trans 453..718 CDD:366146 60/286 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2301
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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