Sequence 1: | NP_001259267.1 | Gene: | Ca-alpha1T / 31550 | FlyBaseID: | FBgn0264386 | Length: | 3218 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_573462.2 | Gene: | Scn4a / 110880 | MGIID: | 98250 | Length: | 1841 | Species: | Mus musculus |
Alignment Length: | 2908 | Identity: | 548/2908 - (18%) |
---|---|---|---|
Similarity: | 899/2908 - (30%) | Gaps: | 1292/2908 - (44%) |
- Green bases have known domain annotations that are detailed below.
Fly 284 LTQYTRPRNWCLMLITNPWFERVSILVILLNCITLGMYQPCVDDACVTNRCKILQIFDDIIFAF- 347
Fly 348 --FALEMTIKMVAMGICGKN-TYLADSWNRLDFFIVLAGLLEYVMHVENL-NLTAIRTIRVLRPL 408
Fly 409 RAINRIPSMRILVMLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWEGILRQRC------------ 461
Fly 462 ------------------------SLMRTEGMVYPLTVP-EVYRVRVRVNSLSQYYEFSKDQD-Y 500
Fly 501 ICSTPNDSGMHLCGNFPPYRIGSLVCNEEAKLFDFNEPTNTSCVNWNQYYTTCKQSGENPFQGTI 565
Fly 566 SFDNIGMAWVAIFLVISLEGWTDIMYYVQDAHSFWDWIYFVLLIVIGSFFMINLCLVVIATQFSE 630
Fly 631 TKKREMERMRQERARYTSTSTLASSTNNSEPATCYAEIVKYIAHLWRRFKRRMLKKYRLYKYQRQ 695
Fly 696 QRKEGLLPNADNLTFSPSRIKCHHPKCPKYSNRKPSSIQDQMITVMVPLNSASNNINNNNNNNSN 760
Fly 761 SSNHNGSGNHTAAGGGNNNNNNNNNNAASCTTVALVNGINGSAASVTMSSAHHQQHQLLQHQQQQ 825
Fly 826 HQNQQQQQQQQQHSSSDNTEQSLAPDGLPRSSSLKKSTAHHQLKPEGSAAEQKTILLKFPQQMID 890
Fly 891 SEQLILQLGNLGKSHPCTSGFLSPPTSASRRPSVMFNEYVLLHTPPALNADPATAGTTTTVAPTV 955
Fly 956 ATVAGTAAAAAAAAATGSGSGNNNHQNGGASGGAGTGGTTEKSNIFSTEKMTQAGDGSIWQVNLP 1020
Fly 1021 QTIGTIANPYADCS-ELGIHDAMTCQELLAFSVAFSAALPTGQSTLESFYTSLARCDPHTAEALR 1084
Fly 1085 AHHKPRSVPTGQNQTTPGAEGATVMVASTAGDTGQTLQPSTVSAVVGGTIDSHAANHRRKEHHQQ 1149
Fly 1150 SHHHHNNNNTTSHSRNYRSRQGQGNSRMREPRAPTGNYMEDYACCYDLYQNALSPLDERPRQRSP 1214
Fly 1215 TTRCLISVYRCMSRVCSW--------IRRYIRRLVEHKYFQQGILLAILINTLSMGIEYHNQPPE 1271
Fly 1272 LTAIVETSNVVFSGIFAVEMLLKVVAEGPFRYIANGFNVFDGIIVILSAIEICQTFMGNGTGGGG 1336
Fly 1337 SGLSVLRTFRLLRILKLVRFMPNLRRQLFVMLRTMDNVAVFFSLLVLFIFIFSILGMYLFGGKFC 1401
Fly 1402 KFLDESGLERECTCPEIISRHPQCECDRKHFNNILWATVTVFQILTQEDWNVVLFNGMEKTSHWA 1466
Fly 1467 AL-YFVALMTFGNYVLFNLLVAILVEGFSSERNERREREQRELVKKLREETLAENYSDGMYDESR 1530
Fly 1531 SEADSSTTNDSYYEVRN--------RWRSAEDVRKLQDSVELIIEAKSNMHRQRLLQPTHD--YQ 1585
Fly 1586 INELPASSAAPSASGTSGASAPGDRERDRDRDRDRERDRDRDRERDREAGGGGKEEGAQHAKPRG 1650
Fly 1651 GLKKTYSIKERRSEAPRLSKIRLARDPPIITTTAATPQDSPSTTLEPGMSFRQWGDMEPPSPPSP 1715
Fly 1716 SLLRPPNIFTGGQRSLDEGIPSIDLIPPSPVLSHKPLNILNASQLGVGMGGGVPSTAGSSSSMHS 1780
Fly 1781 VIIDDISKSSSSTAAATPIYVPTISSTADAQSQSHSLNDVSVGSSPGGEIPATGMSRNANTGAST 1845
Fly 1846 SGSSSSERLPLAPPPQQGSFKQRLRRGSSKKRRASALALATDDNPARRTLDNQARRTQDEEEEQQ 1910
Fly 1911 QLNNGGD--NSCLLRNSNAVVSGSSSGTKETNRLSPQNSIRRLSNTLSIGSGPVGSRRASACIFN 1973
Fly 1974 SQ-VYQNLNQPPKLRPGSGQRRMSSIELAFSKTSHLNLHNLEANRKSLSYTNSKMDLDKWNKSYG 2037
Fly 2038 NLNEPDNMLQQYMEARDKRKNSISHYNLKKRLEEKELQQLQQLHQQQLLQQRQDSFSSTTQQQQQ 2102
Fly 2103 QLQQHRLSKDQQQLAMQPHSMVPGGGERYSKLKMLIEQLTPKHFTTEREDYSLYIFPEDNRFRQI 2167
Fly 2168 CTWFVNQKWFDNVVLLFIALNCITLAMERPNIPPSSTERLFLATANYVFTVVFTVEMFIKVVATG 2232
Fly 2233 MFYGHDAYFTSGWNIMDGSLVTISIIDLLMSLISESSPRIFGILRVFRLLRSLRPLRVINRAPGL 2297
Fly 2298 KLVVQTLLSSLRPIGNIVLICCTFFIIFGILGVQLFKGTFYYC------EGENIKGVRNADECRR 2356
Fly 2357 I--PGNV-WTNRKYNFDDLGKALMSLFVLSSRDGWVNIMYTGLDAVGVDQQPIVNYNEWRLLYFI 2418
Fly 2419 AFILLVGFFVLNMFVGVVVENFHRCREE--------QEKEEKIRRAAKRALQMEKKRRRMHEPPY 2475
Fly 2476 YTNYSPTRMFVHNVVTSKYFDLAIAAVIGLNVVTMAMEYYKMPSGLKY-ALKIFNYFFTAVFILE 2539
Fly 2540 ANMKLVALGWKLYLKDRWNQLDVGIVLLSIVGIVLEELETNTHQIIPINPTIIRVMRVLRIARVL 2604
Fly 2605 KLLKMANGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDEIPCQGLGEHAHF 2669
Fly 2670 ANFGMAFLTLFRVATGDNWNGIMKDTLRD---NCDDAAD----CVRNCCVSSVIAPIFFVIFVLM 2727
Fly 2728 AQFVLVNVVVAVLMKHL----EESHKQM-EDELDMEVEL-ERELVREQEFAQEQKLCQQLAEAQS 2786
Fly 2787 --KAAAPPRPLAKVKSLPKNFIYSTPSLDKKFPAVSGVNNPSLTSSAATNLNQVATAGSGGAAPG 2849
Fly 2850 AVPAGSGAGPRRQTVQYFQQPPQSMLGGLSLAEMGGTLTPQALGARLGEPFGGGGGNKSGPRRQS 2914
Fly 2915 YWQINPIRKRG-----VLSKERSLDEQAIRRRNLEAKRTSCDSLPWGGDALDCRRGTIFESL--- 2971
Fly 2972 ---ESDGGGVGGGGSGGGGGGLGGGVSYDLRSVRSADVGHSEMDGDVSLSVVSALVPSVTTPLPP 3033
Fly 3034 PLSLPIVTPTSTPTPLQLPMPMPMPMAHPPPRRPFGWSQSVDQGCLRS 3081 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ca-alpha1T | NP_001259267.1 | Ion_trans | 332..636 | CDD:278921 | 88/346 (25%) |
Ion_trans | 1261..1495 | CDD:278921 | 75/234 (32%) | ||
Ion_trans | 2192..2448 | CDD:278921 | 99/272 (36%) | ||
Ion_trans | 2510..2728 | CDD:278921 | 73/225 (32%) | ||
Scn4a | NP_573462.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 32..63 | ||
I. /evidence=ECO:0000305 | 113..448 | 97/390 (25%) | |||
Ion_trans | 130..451 | CDD:395416 | 95/393 (24%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 484..522 | 18/196 (9%) | |||
II. /evidence=ECO:0000305 | 554..826 | 90/332 (27%) | |||
Ion_trans | 571..784 | CDD:395416 | 73/235 (31%) | ||
Na_trans_assoc | 810..1020 | CDD:399489 | 58/640 (9%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 854..896 | 12/94 (13%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 925..983 | 16/109 (15%) | |||
III. /evidence=ECO:0000305 | 1007..1320 | 112/350 (32%) | |||
Ion_trans | 1024..1298 | CDD:395416 | 103/280 (37%) | ||
Na_channel_gate | 1290..1342 | CDD:240441 | 10/57 (18%) | ||
Important for rapid channel inactivation. /evidence=ECO:0000250|UniProtKB:P15390 | 1304..1306 | 0/1 (0%) | |||
IV. /evidence=ECO:0000305 | 1329..1627 | 96/313 (31%) | |||
Ion_trans | 1347..1603 | CDD:395416 | 86/266 (32%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1776..1841 | 22/111 (20%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |