DRSC/TRiP Functional Genomics Resources

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Protein Alignment HMGCL and Hmgcl

DIOPT Version :10

Sequence 1:NP_000182.2 Gene:HMGCL / 3155 HGNCID:5005 Length:325 Species:Homo sapiens
Sequence 2:NP_609089.1 Gene:Hmgcl / 33978 FlyBaseID:FBgn0031877 Length:323 Species:Drosophila melanogaster


Alignment Length:312 Identity:189/312 - (60%)
Similarity:237/312 - (75%) Gaps:4/312 - (1%)


- Green bases have known domain annotations that are detailed below.


Human    10 RRLVGLASLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETT 74
            |.::.|.:.|...||:    ..:|:|||||||||||||..::....||:||:.|||.||..||.|
  Fly     7 RSILALTAKRTAVTSA----ANQVRIVEVGPRDGLQNEPKLLPAATKIELINQLSETGLRTIEAT 67

Human    75 SFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNI 139
            ||||.||||||||:.||||||:|..||:||||||||||||:|:.|||:||.:|||||:.|:.||:
  Fly    68 SFVSAKWVPQMGDNAEVLKGIRKVTGISYPVLTPNLKGFESALEAGAEEVAVFGAASDAFSLKNV 132

Human   140 NCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGD 204
            ||:..|:.:||..:|||||...:.||||||..:||||||.::|:.|.:|.:..|.||||||||||
  Fly   133 NCTAAEAIERFKPVLKAAQKHGVRVRGYVSTVVGCPYEGAVAPSAVVKVVEALYQMGCYEISLGD 197

Human   205 TIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYA 269
            ||||||||.|:.||..|.:.||...|||||||||||||:|.|::|..|:.||||||:||||||||
  Fly   198 TIGVGTPGTMRRMLDEVTKVVPAKDLAVHCHDTYGQALSNILVSLDYGIRVVDSSVSGLGGCPYA 262

Human   270 QGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQA 321
            :|||||.||||:||:|.|:|:.|||||.||::.|.:||..|.|.:.|||.:|
  Fly   263 KGASGNAATEDVVYLLHGMGLDTGVNLDKLIQVGRYICTELGRTSESKVNRA 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HMGCLNP_000182.2 TIM-like beta/alpha barrel domains 17..325 CDD:473867 187/305 (61%)
Microbody targeting signal. /evidence=ECO:0000255 323..325
HmgclNP_609089.1 DRE_TIM_HMGL 28..300 CDD:163676 175/271 (65%)
Blue background indicates that the domain is not in the aligned region.

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