DRSC/TRiP Functional Genomics Resources

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Protein Alignment raptor and KOG1

DIOPT Version :9

Sequence 1:NP_001284924.1 Gene:raptor / 31543 FlyBaseID:FBgn0029840 Length:1621 Species:Drosophila melanogaster
Sequence 2:NP_012056.1 Gene:KOG1 / 856593 SGDID:S000001229 Length:1557 Species:Saccharomyces cerevisiae


Alignment Length:1806 Identity:506/1806 - (28%)
Similarity:741/1806 - (41%) Gaps:615/1806 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 QILGMPPARSL------CFGERIRDDRCPLSL--------QTKRHKERIQAMMYE---------R 205
            :|.|..|.:.|      .|.|:.:.|:...||        ..||||.....:..|         .
Yeast     3 EIYGPQPLKPLNTVMRHGFEEQYQSDQLLQSLANDFIFYFDDKRHKTNGNPIPEEDKQRDVNRYY 67

  Fly   206 QP---WRI-RERMKTASVALVLCLNIGVDPPDVVKIQPCSRLECWIDPSSV-SPPKAMELIGSNL 265
            ||   |:| ::|.||.|.||:||||:|||||||:|..||:|:|.|:||.:. ...||:|.||.||
Yeast    68 QPITDWKIMKDRQKTVSAALLLCLNLGVDPPDVMKTHPCARVEAWVDPLNFQDSKKAIEQIGKNL 132

  Fly   266 QMQYERWQPRARYKKCNDPTVDDVKKLCTSLRRNAKGERILFHYNGHGVPKPTANGEIWVFNKTF 330
            |.|||....|.|||:..||.|:|||:.|.||||.:|.:|||||||||||||||.:|||||||:.:
Yeast   133 QAQYETLSLRTRYKQSLDPCVEDVKRFCNSLRRTSKEDRILFHYNGHGVPKPTKSGEIWVFNRGY 197

  Fly   331 TQYIPLSIFELITWMSAPSIYVYDCSNAGIIINSFQPYAKQH---EEELGKALAAAQQRGGVQQL 392
            |||||:|:::|.||:.||.|:||||::|..|:.:||.:.::.   :||                 
Yeast   198 TQYIPVSLYDLQTWLGAPCIFVYDCNSAENILINFQKFVQKRIKDDEE----------------- 245

  Fly   393 VGGSGGAANVAANQVQLTNQMVSYKNCIHLAACAANEILPMNAQLPADLFTSCLTTPINIALKWY 457
                 |..:|||     .:...:|::|..||:|.::|:|.|:.:||||||:.|||.||.|:::.:
Yeast   246 -----GNHDVAA-----PSPTSAYQDCFQLASCTSDELLLMSPELPADLFSCCLTCPIEISIRIF 300

  Fly   458 AMQEKL--------------------------GMVPRIQSELIDKIPGKVNDRRTMMGELNWIFT 496
            .||..|                          ..:|.:      .|||.::||||.:||||||||
Yeast   301 LMQSPLKDSKYKIFFENSTSNQPFGDSKNSFKSKIPNV------NIPGMLSDRRTPLGELNWIFT 359

  Fly   497 AITDTIAWNTLPRELFQRLFRQDLLVASLFRNFLLAERILRSHDCTPVSLPALPPCY-RHPMWKA 560
            ||||||||.:|||.||::|||.||::|:||||||||:||:..::|.|||.|.||... .|||||:
Yeast   360 AITDTIAWTSLPRPLFKKLFRHDLMIAALFRNFLLAKRIMPWYNCHPVSDPELPDSITTHPMWKS 424

  Fly   561 WDLVVDLALQQLPEILD-HNAP------------------------------------------- 581
            |||.:|..|.::  ::| .|||                                           
Yeast   425 WDLAMDEVLTKI--VIDLKNAPPATALESQMILQQQETLQNGGSSKSNAQDTKAGSIQTQSRFAV 487

  Fly   582 -------------------------YRQLP-----------FFEHQLTAFQVWLDSESESRTPPE 610
                                     .:||.           |||..||||::||...|..|.|||
Yeast   488 ANLSTMSLVNNPALQSRKSISLQSSQQQLQQQQQQQQQFTGFFEQNLTAFELWLKYASNVRHPPE 552

  Fly   611 QLPIVLQVLLSQVHRLRALELLARFLDLGPWAVNLALGVGIFPYVLKLLQSSTRELRPVLVFIWA 675
            |||||||||||||||:|||.||:||||||||||.|:|.:||||||||||||...||:|:||||||
Yeast   553 QLPIVLQVLLSQVHRIRALVLLSRFLDLGPWAVYLSLSIGIFPYVLKLLQSPAPELKPILVFIWA 617

  Fly   676 KILAVD-PSCQVDLVKE--YKYFLSVL-------------------------------------- 699
            :|:::| .:.|.:|:||  |.||::||                                      
Yeast   618 RIMSIDYKNTQSELIKEKGYMYFVTVLVPDWGVNGMSATNGSAMINSGNPLTMTASQNINGPSSR 682

  Fly   700 ---------------------QDTSVSKEHRTLSAFVLSSIVHNFLLGQTSALQGPLLS-ICLEQ 742
                                 .....:.|.:.::.|||:|.|.||.|||.:.....|:: :|...
Yeast   683 YYERQQGNRTSNLGHNNLPFYHSNDTTDEQKAMAVFVLASFVRNFPLGQKNCFSLELVNKLCFYI 747

  Fly   743 LNDGSWLLRQWLAICLGMLWQNFEKARWSGARDLAHEKLYVLLRDSIPEVRAAAVFALGTFISSV 807
            .|....|||||..|.||:|:.:....|:......|.|.|...|:|.:||||.|::|||..|||..
Yeast   748 DNSEIPLLRQWCVILLGLLFADNPLNRFVCMNTGAVEILLKSLKDPVPEVRTASIFALKHFISGF 812

  Fly   808 TD----------------------------------RSEEQANNIDR------------------ 820
            .|                                  :|::|..::::                  
Yeast   813 QDAEVILRLQQEFEEQYQQLHSQLQHLQNQSHLQQQQSQQQQQHLEQQQMKIEKQIRHCQVMQNQ 877

  Fly   821 --IIAITML--ETVG---------EDMSPLVRMELAAALQWMVVLFESQFVAVYLTEHMRGHVSA 872
              :|.:..|  :.:|         .|.|.|||.||......:|..:.:.|:.|..          
Yeast   878 LEVIDLRKLKRQEIGNLISILPLINDGSSLVRKELVVYFSHIVSRYSNFFIVVVF---------- 932

  Fly   873 ASFVMCPDPRDLTSSTHSLERHVTIRRGASSSSISNMGGASISSGTGSSSNPLGRSKSGSGSSGG 937
                     .||......||:                          |..|....|...|.|.| 
Yeast   933 ---------NDLLEEIKLLEK--------------------------SDINTRNTSDKYSVSQG- 961

  Fly   938 RGAAGAAGGTNSIPFQSIFTKLWLGICNLAQDPFPRVAAIAQEIVEHVRDTALCPIMAAKEATMA 1002
                            |||..:|..:..||:|||.....:::::::::    |..:.|.||.   
Yeast   962 ----------------SIFYTVWKSLLILAEDPFLENKELSKQVIDYI----LLELSAHKEL--- 1003

  Fly  1003 NASEKCSSLSVSLPPSPNTRVNYLGGGGAPGGAGATAESPPVGAAASGASHWAQKLRLSGSGACM 1067
                                          ||..|..|.  .....|..:|...|...:.|..  
Yeast  1004 ------------------------------GGPFAVMEK--FLLKRSSKAHQTGKFGFNSSQV-- 1034

  Fly  1068 GAGDPQTILQRKLRTSSINDETDSG----------PGYSR----GVAGAGTGLGLPSGPRES-TH 1117
                  ..::..||:.|.|:..|:.          |..|.    .:|.....||......:| |.
Yeast  1035 ------QFVKSSLRSFSPNERVDNNAFKKEQQQHDPKISHPMRTSLAKLFQSLGFSESNSDSDTQ 1093

  Fly  1118 SARSS--------GSESNHYLEPGHSLTPIVLT----------------EFIPWAISYFTRPGKE 1158
            |:.:|        |....:.|...:::.|...|                .|:.::..||..|..:
Yeast  1094 SSNTSMKSHTSKKGPSGLYLLNGNNNIYPTAETPRFRKHTEPLQLPLNSSFLDYSREYFQEPQMK 1158

  Fly  1159 RYSSAE-GSAEEGRQRFPVDRNSAELRRRRLRFLRND-FVRRHAGRKHQELIDPYGFDVCVWNRK 1221
            :..:.| ||.|          .:|.|.||.    ||: .::...|.|...:...:...:...|.|
Yeast  1159 KQEADEPGSVE----------YNARLWRRN----RNETIIQETQGEKKLSIYGNWSKKLISLNNK 1209

  Fly  1222 TQFTPSIVKLLPYEPQIAVA-YREKVLVYDFQYNSVRTYGAESLGGNFTGYSSGYGSGSGSSSSL 1285
            :|  |.::|...:|.|:..| .|..:.|:|::           .|...:.:|:|           
Yeast  1210 SQ--PKLMKFAQFEDQLITADDRSTITVFDWE-----------KGKTLSKFSNG----------- 1250

  Fly  1286 NGSTPRKSGAHTSGGGGGGFSAAPF-ARVSSIEFINAQDMALNLVAHEDGVVRVWQSSPPASSAT 1349
                                  .|| .:|:.::.||..|.||.|....|||:::::.....    
Yeast  1251 ----------------------TPFGTKVTDLKLINEDDSALLLTGSSDGVIKIYRDYQDV---- 1289

  Fly  1350 SEDTPSKARLVTAWTALGQVNQHNHRQRSVASGGSIGKGADASGLSSAAI--GSGGIVTAWQQCS 1412
              ||   .::|:||                            .||:...:  .|.|::|.|.|..
Yeast  1290 --DT---FKIVSAW----------------------------RGLTDMLLTPRSTGLLTEWLQIR 1321

  Fly  1413 QHLVIGGGGCRFIRIWDVERELKLADIPLGRSETCARVLSPYLPNMRSDVILAGCDDGSVRLFDK 1477
            ..| :..|..:.||:||...|....|||   ::|.:.:.|.....:..::.:||..|||:|::|:
Yeast  1322 GSL-LTTGDVKVIRVWDAHTETVEVDIP---AKTSSLITSLTADQLAGNIFVAGFADGSLRVYDR 1382

  Fly  1478 RCAPQDAGISVYR----RHSAPILHASLRANGL-VLVSGCTEGRISVADMR-------------- 1523
            |..|:|:.|..:|    :....|.:..|:..|. .||||.|.|.:.:.|:|              
Yeast  1383 RLDPRDSMIRRWRAGNDKQGVWINNVHLQRGGYRELVSGATNGVVELWDIRSEDPVESFVDQNVT 1447

  Fly  1524 ---GSQSSINPFDV--VYE--------------WDAGGDV--TAITSHQ--LEDTVACGNASKIV 1565
               |||........  |:|              |...||:  :...||.  :..|:|.....|.:
Yeast  1448 SQYGSQQKPTTMTCMQVHEHAPIIATGTKQIKIWTTSGDLLNSFKNSHNNGVTSTLAATGIPKSL 1512

  Fly  1566 IYSLDGRQQKVLRTNEGFIGPKIGHPTYLYFHPYKAQL-AVGFVDNTVAIY 1615
            .||         .|::.|:       :.:.|||::..: |....|:.|.||
Yeast  1513 SYS---------STSDAFL-------SSMAFHPHRMMIAATNSHDSIVNIY 1547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
raptorNP_001284924.1 Raptor_N 219..365 CDD:291222 88/146 (60%)
HEAT repeat 612..634 CDD:293787 19/21 (90%)
HEAT repeat 646..684 CDD:293787 24/38 (63%)
HEAT repeat 694..724 CDD:293787 11/88 (13%)
HEAT repeat 734..760 CDD:293787 10/26 (38%)
HEAT_2 743..847 CDD:290374 40/168 (24%)
HEAT repeat 774..803 CDD:293787 13/28 (46%)
HEAT repeat 822..848 CDD:293787 10/36 (28%)
WD40 <1296..1617 CDD:225201 84/366 (23%)
WD40 1400..>1617 CDD:295369 65/259 (25%)
WD40 repeat 1448..1489 CDD:293791 12/40 (30%)
WD40 repeat 1496..1539 CDD:293791 16/76 (21%)
WD40 repeat 1544..1581 CDD:293791 8/40 (20%)
WD40 repeat 1588..1615 CDD:293791 6/27 (22%)
KOG1NP_012056.1 Raptor_N 81..232 CDD:405260 91/150 (61%)
HEAT repeat 738..769 CDD:293787 12/30 (40%)
HEAT repeat 781..807 CDD:293787 13/25 (52%)
HEAT 783..812 CDD:397231 15/28 (54%)
WD40 1224..1548 CDD:421866 91/425 (21%)
WD40 repeat 1258..1296 CDD:293791 11/46 (24%)
WD40 repeat 1301..1348 CDD:293791 14/47 (30%)
WD40 repeat 1356..1398 CDD:293791 13/41 (32%)
WD40 repeat 1405..1442 CDD:293791 11/36 (31%)
WD40 repeat 1461..1517 CDD:293791 12/64 (19%)
WD40 repeat 1522..1547 CDD:293791 6/31 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346779
Domainoid 1 1.000 201 1.000 Domainoid score I557
eggNOG 1 0.900 - - E1_KOG1517
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H80210
Inparanoid 1 1.050 586 1.000 Inparanoid score I144
Isobase 1 0.950 - 0 Normalized mean entropy S2708
OMA 1 1.010 - - QHG55294
OrthoFinder 1 1.000 - - FOG0004448
OrthoInspector 1 1.000 - - oto99677
orthoMCL 1 0.900 - - OOG6_101923
Panther 1 1.100 - - LDO PTHR12848
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R717
SonicParanoid 1 1.000 - - X3153
TreeFam 1 0.960 - -
1514.830

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