DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp5D and Cd37

DIOPT Version :10

Sequence 1:NP_001259266.1 Gene:Tsp5D / 31540 FlyBaseID:FBgn0029837 Length:287 Species:Drosophila melanogaster
Sequence 2:XP_017444339.1 Gene:Cd37 / 29185 RGDID:62035 Length:396 Species:Rattus norvegicus


Alignment Length:275 Identity:59/275 - (21%)
Similarity:98/275 - (35%) Gaps:81/275 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GLWLRLSYAGYATLLPQHAGLSADTI-----FMGIGGT-GFVVSFFGCCGAWVQSRCLLVLYFML 89
            |.|:.:....:.:.:    |||...:     .:.:.|. ...::..||.||..:.||||.|||.:
  Rat    56 GTWILIDKTSFVSFV----GLSFVPLQTWSKVLSVSGVLTMALALLGCVGALKELRCLLGLYFGM 116

  Fly    90 IVMLFMSEFLVGSIAFLFRGGLGRTLANELRFGIERHYNSSDRGSLVAPSVASIWDSVQQSFECC 154
            :::||.::..:|.:....|..|.|.:...:...|:.:..:.|.     .:....||..|....||
  Rat   117 LLLLFATQITLGILISTQRVRLERRVQELVLRTIQSYRTNPDE-----TAAEESWDYAQFQLRCC 176

  Fly   155 GVSSYEDWYDIQSWPGRRWVPESCCRTLYDQRQVLTEGSGDGMMRP-DCGRS--ENPSLWWDK-- 214
            |..|..||                     ::.|:|.....:.:..| .|..|  .|.|..:||  
  Rat   177 GWQSPRDW---------------------NKAQMLKANGSEELFVPCSCYNSTATNDSSGFDKLF 220

  Fly   215 -------------------------------GCAHSLQSWFTGQLNVVGAVG--LGIAFVQLFGL 246
                                           |||.|||.|...  |::..||  ||:..:::.| 
  Rat   221 LSQLSRLGPRAKLRQTADICALPAKAHIYREGCARSLQKWLHN--NIISIVGICLGVGLLEVSG- 282

  Fly   247 ITSMLLFCTVKHKRA 261
                :..|....:||
  Rat   283 ----MALCLQLQRRA 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp5DNP_001259266.1 Tetraspanin 9..254 CDD:459767 56/266 (21%)
NET-5_like_LEL 105..228 CDD:239418 30/158 (19%)
Cd37XP_017444339.1 Tetraspanin 49..>177 CDD:459767 29/129 (22%)
CD37_CD82_like_LEL 131..266 CDD:239413 31/162 (19%)

Return to query results.
Submit another query.