DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp5D and Cd9

DIOPT Version :10

Sequence 1:NP_001259266.1 Gene:Tsp5D / 31540 FlyBaseID:FBgn0029837 Length:287 Species:Drosophila melanogaster
Sequence 2:XP_063141640.1 Gene:Cd9 / 24936 RGDID:2318 Length:249 Species:Rattus norvegicus


Alignment Length:247 Identity:57/247 - (23%)
Similarity:101/247 - (40%) Gaps:50/247 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GYTCIRRTFCWLNIILWLCSCAFLGAGLWLRLSYAGYATLLPQHAGLSA----DTIFMGIGGTGF 65
            |..||:......|.|.||...|.|..|||||.. :...::..|....|:    ..|.:|.|....
  Rat     6 GSKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFD-SQTKSIFEQETNHSSFYTGVYILIGAGALMM 69

  Fly    66 VVSFFGCCGAWVQSRCLLVLYFMLIVMLFMSEFLVGSIAFLFRGGLGRTLANELRFGIERHYNSS 130
            :|.|.|||||..:|:|:|.|:|..::::|..|.......:..:..:.:.|....:...::..|..
  Rat    70 LVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEIAAAVWGYTHKDEVIKELQEFYKDTYQKLRNKD 134

  Fly   131 D--RGSLVAPSVASIWDSVQQSFECCGVSSYEDWYDIQSWPGRRWVPESCCRTLYDQRQVLTEGS 193
            :  |.:|.|         :..:..|||::...:          :::.:.|     .::|||..  
  Rat   135 EPQRETLKA---------IHMALNCCGIAGGVE----------QFISDIC-----PKKQVLES-- 173

  Fly   194 GDGMMRPDCGRSENPSLWWDKGCAHSLQSWFTGQLNVVGAVGLGIAFVQLFG 245
                             :..|.|..::...|..:.:::||||:|||.|.:.|
  Rat   174 -----------------FQVKSCPDAIDEVFHSKFHIIGAVGIGIAVVMVSG 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp5DNP_001259266.1 Tetraspanin 9..254 CDD:459767 55/243 (23%)
NET-5_like_LEL 105..228 CDD:239418 15/124 (12%)
Cd9XP_063141640.1 None

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