DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5921 and PsGEF

DIOPT Version :9

Sequence 1:NP_727061.2 Gene:CG5921 / 31538 FlyBaseID:FBgn0029835 Length:886 Species:Drosophila melanogaster
Sequence 2:NP_996333.4 Gene:PsGEF / 31224 FlyBaseID:FBgn0264598 Length:2777 Species:Drosophila melanogaster


Alignment Length:1112 Identity:217/1112 - (19%)
Similarity:342/1112 - (30%) Gaps:365/1112 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LTNSA--STDCSSSMQGSTTSSASSDVM-TLT-------TTAASSWCAIPASSRLRVLRLVRPHQ 71
            |.|:|  ||..||.:.       |.||: ||.       |||:.....:|:...:. |:..:..|
  Fly  1170 LVNAALGSTPLSSPLD-------SPDVLNTLVPLSDIGLTTASMGSMKLPSLDSIH-LKQQQKQQ 1226

  Fly    72 RRLLVGGPERGSTYGFTVR-GGREHGTGFFVSHVEHGGEAHLKGLRIGD--QILRINGFRLDDAV 133
            |.....|....:|...|.| ..|.||.    :|..|||......|.|.:  :||...|.....|:
  Fly  1227 RTNNSHGHVHSATGVATDRTADRSHGH----NHGIHGGHVEQIELLIDEKCRILNKTGTPKSSAL 1287

  Fly   134 H-----------------------------KEFIQLVAGQD-----RVTLKVR------------ 152
            |                             .|..||:...|     |:|...|            
  Fly  1288 HLANWMKGQLDKQQQQARLAAIARSQENVSAEDEQLIFNSDSEQDERITYWTRQQLEKRTKELNL 1352

  Fly   153 -----GVGMLP----VRDLPEERLSWSVVK-LPSVSGTPSESSFKGERRGASRDISVVLHVAPRT 207
                 |:...|    .|....|.||.|... :.|.|.....:|...:....:.|..:.:..:|..
  Fly  1353 AKENGGLSARPNFGGKRLSGVEELSMSATSDIYSTSEAEGVTSVISQSHSTTSDSQITVRSSPIV 1417

  Fly   208 KLGLGICKGPEWKPGIFVQFTKDRSVAREAGLRPGDQILSVNSIDFSDVLFSEAVAVMKSSSKLD 272
            ...|.:|:          ...|:...:...|.|||.. ..||:...:.||...::.|..|.|..:
  Fly  1418 LDKLAVCR----------HCHKNCQQSGPGGARPGGG-GGVNNSSSTPVLLCNSLKVQHSQSSPN 1471

  Fly   273 MVVRTAAGC-------------DLFPGESSGYNSSASSVTGDQSPCWADAKSKRLT--------- 315
            ...:.:.|.             ....|..|..:.|:|::||:.|.....:.|:|.|         
  Fly  1472 RCCKLSNGIAGATEMANPKNSNRTGTGTGSVTSMSSSTITGELSSKVVASSSRRETGDTESDVAQ 1536

  Fly   316 -------------------AVREESGAGGGG---------------CGLSSAP--------GAGS 338
                               |:...|.:.|.|               ..:||.|        |.||
  Fly  1537 LITDEISQSQSEATDDSVGAMPNSSRSAGEGNPVITGSRLRHLDPPVSVSSLPNGHCSAGVGGGS 1601

  Fly   339 PN---WSQGVEVHKQM------------NKTIIKLTENGTSINNTYIASTGGSSVSGSGSTGSG- 387
            |.   ..:...|..||            .|.|:.:||....:.::....:|..|.:|:||.|.. 
  Fly  1602 PKPLPPPRRTRVVAQMCQEPPRPKANQQVKAIVTITETARIMRSSPTKGSGSGSATGTGSVGGSP 1666

  Fly   388 ----------TSGRSQQSQSNP-----------SNPSRNSTTMKRSHLRPVNSAGSGIGLSSGSA 431
                      |......:|.:|           .:|.:.:||:::.. .....:...|||:. .|
  Fly  1667 AKYAACHCRCTPEDFTHAQLSPDKMEHQTCKLLESPKQTTTTLEQKQ-EDEQLSLMLIGLAQ-LA 1729

  Fly   432 GSAGSAGSSGSGSRSGGVIAPAPAPPPPAM-----------NEGANASGSVGSSLSSAITEELKK 485
            .:|...|..............|..||.|..           |.|.:::|...|:.|:|.|...:.
  Fly  1730 PAATLCGQERIPKEENSTPTIAVVPPTPDSVLTKTSTHVWDNSGCSSNGGGTSTTSTATTTTKQP 1794

  Fly   486 RK------------EKQQQQQHQQR------------------HNRDRDRDGNGNVDRQL----- 515
            |:            |....::...|                  .:.|| .|....:|..|     
  Fly  1795 RQAIIENIPEDSCDESPLDEEPPYRPMSSALRRFGTMSSLEKLPSDDR-MDEADELDDDLDSFKP 1858

  Fly   516 TGHNGNGGHRSSVGQVSHRQRANVAGVAATLQGSERISNLTGGGGAGGAGGSNGAAGAGG----- 575
            .||:||........:.:..:||.|.........|..|.|  |.|.|.||..:...|....     
  Fly  1859 NGHDGNSPQNEEDDEDADSERALVQNDLGASSSSGVIVN--GEGLASGAWTNRAGAYVSDKMSFF 1921

  Fly   576 DQHTALMDEF---------KRAHQRMFRNGFHESEHKLSSLGKSSLADRSLYGREMSLLRVKNGG 631
            ::..|.:|::         ::.||   :....|::.::......:.:...::|...|      ||
  Fly  1922 EESRAFIDKYLGRWNAGDAQQQHQ---QGTASETDEQMDECTSGATSGEEVWGTPTS------GG 1977

  Fly   632 SG--------GGEGSGVMPTMRPVSMG--------------RPLVTMST--------YQERGETL 666
            ..        ..|.:...||....|:.              .|.:|.||        |:.|.|.|
  Fly  1978 DNDDQDLQLINSENTHSSPTKSSTSLNDDDDTELMMDELLMAPPMTASTIRGLLPRFYRRRLEPL 2042

  Fly   667 KRTSIMPDESCYRNSINSNNNNGFSRNRSNSNTNNNNRLQSQNGVNPANGNGSPELPPPPPQFAN 731
            .......||.  :...:|::      .:....|.|.:.|:...|    :.:.|..:||.||....
  Fly  2043 FEEETESDEE--KTQQDSDD------IKKGEATTNGHYLEDSAG----SSSDSESVPPAPPLVPR 2095

  Fly   732 PQPKQMPPQHIKPMTGNAAANGSGSANGLG-------NGSLAKVRQPMSPMRSASISVGGFRP-- 787
            |   .:|.:...|       :..|....|.       :.|:.::      :.:.:.|..|.||  
  Fly  2096 P---VVPDREEDP-------SAEGQQENLAMEDQEDLHSSVERL------LPNLATSAMGPRPLL 2144

  Fly   788 -----PAT---PQPDYDAVQIRSS------QGSESVSGRDVATSQQQRRTLRLGTVTIGEYGDQR 838
                 |.|   |||  .||.:.||      |...||.|||:|...       :||.|:       
  Fly  2145 TTRLLPTTAIDPQP--PAVLVASSCEYLLDQRPSSVPGRDLAGGS-------IGTTTM------- 2193

  Fly   839 TTGKRET 845
             |..|.|
  Fly  2194 -TSSRPT 2199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5921NP_727061.2 PDZ_signaling 82..152 CDD:238492 23/106 (22%)
PDZ_signaling 197..276 CDD:238492 15/78 (19%)
PsGEFNP_996333.4 DUF4799 <102..209 CDD:292674
C2 286..>381 CDD:278593
PDZ_signaling 644..716 CDD:238492
RhoGEF 831..1000 CDD:295373
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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