DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5921 and USH1C

DIOPT Version :10

Sequence 1:NP_727061.2 Gene:CG5921 / 31538 FlyBaseID:FBgn0029835 Length:886 Species:Drosophila melanogaster
Sequence 2:XP_016872564.1 Gene:USH1C / 10083 HGNCID:12597 Length:956 Species:Homo sapiens


Alignment Length:229 Identity:89/229 - (38%)
Similarity:128/229 - (55%) Gaps:15/229 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 SSRLRVLRLVRPHQRRLLVGGPERGSTYGFTVRGGREHGTGFFVSHVEHGGEAHLKGLRIGDQIL 122
            |.:|:.:||.|.|...|           |.:||||.|.|.|.|:||:..||:|...||::||:|:
Human    82 SRKLKEVRLDRLHPEGL-----------GLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIV 135

  Fly   123 RINGFRLDDAVHKEFIQLVAGQDRVTLKVRGVGMLPVRDLPEERLSWSVVK--LPSVSGTPSESS 185
            ||||:.:....|:|.|.|:..:..|::|||.:|::||:..|:|.|:|..|.  :....|......
Human   136 RINGYSISSCTHEEVINLIRTKKTVSIKVRHIGLIPVKSSPDEPLTWQYVDQFVSESGGVRGSLG 200

  Fly   186 FKGERRGASRDISVVLHVAPRTKLGLGICKGPEWKPGIFVQFTKDRSVAREAGLRPGDQILSVNS 250
            ..|.|....:.:.:.| |..| .||..|..||..|||||:...|..|::.|.||..||||:.||.
Human   201 SPGNRENKEKKVFISL-VGSR-GLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNG 263

  Fly   251 IDFSDVLFSEAVAVMKSSSKLDMVVRTAAGCDLF 284
            :|||::...|||.|:|||..|.:.:..|||.:||
Human   264 VDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELF 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5921NP_727061.2 PDZ1_harmonin 72..155 CDD:467219 32/82 (39%)
PDZ_canonical 195..276 CDD:483948 35/80 (44%)
USH1CXP_016872564.1 harmonin_N 2..80 CDD:259819
PDZ1_harmonin 84..168 CDD:467219 37/94 (39%)
PDZ2_harmonin 208..289 CDD:467220 35/82 (43%)
tolA_full <302..>383 CDD:274303
PDZ3_harmonin 751..843 CDD:467221
Blue background indicates that the domain is not in the aligned region.

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