DRSC/TRiP Functional Genomics Resources

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Protein Alignment Itga5 and scb

DIOPT Version :9

Sequence 1:NP_001101588.1 Gene:Itga5 / 315346 RGDID:2925 Length:1099 Species:Rattus norvegicus
Sequence 2:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster


Alignment Length:1197 Identity:296/1197 - (24%)
Similarity:452/1197 - (37%) Gaps:316/1197 - (26%)


- Green bases have known domain annotations that are detailed below.


  Rat    78 LPLLLLLWPPPLQVGGFNLDAEAPAVLSGPP----------GSLFGFSVEFYRPGRDGVSVLVGA 132
            |.||.|:    ..:..||.......|::.|.          .|.||:::...:     .|::|||
  Fly    13 LALLALI----SHIEAFNFMPRPSRVINSPKHLKFHINQTRSSYFGYTLVIRQ-----TSIIVGA 68

  Rat   133 PKANT---SQPGVLQGGAVYVCPWGTSPIQCSTIQFDSKGSRILESSLYSEEPVEYKSLQWFGAT 194
            |:|.:   ||..:.:.||:|.|.. |:.: ||....||:|:.....|.|:.:. |.|..||.|.:
  Fly    69 PRAQSTLESQRTINETGAIYRCSL-TNGV-CSPYVLDSRGNVDAPYSEYTFDS-ERKDFQWLGGS 130

  Rat   195 V---RAHGSSILACAPLYSWRTEKDPQNDPVGTCY------LST-ENFTRILEYAPCR------- 242
            :   ......:|.|||.:...:.:|  |...|.||      .|| ::.|||   :|.|       
  Fly   131 MDGGTKDTDKLLVCAPRFYAPSSRD--NHLHGVCYWVNNTVASTPQHVTRI---SPLRLKSEQVK 190

  Rat   243 -SDFGSAAGQGYCQG--GFSAEFTKTG-RVVLGGPGSYFWQGQIL-----------SATQEQIS- 291
             .|.|:.|...|..|  |.||...... :.::|.||...|:|.::           :|::...| 
  Fly   191 EEDNGNKASFFYIMGELGLSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSK 255

  Rat   292 ----------------ESYYPQYLINPVQGQLQTRQASSVYDDSYLGYSVAVGEFSGDDTED--F 338
                            |.|.|:.....:.||         .:|||.||:|:.|.|...:...  :
  Fly   256 ALRRTYRDVDSNDYTPEHYAPEIPTPGLWGQ---------EEDSYFGYAVSSGFFDSSNPTKLLY 311

  Rat   339 VAGVPKGNLTYG--YVTVLNGSDIHSLYNVSGEQMASYFGYAVAATDTNGDGLDDLLVGAPL-LM 400
            ||..|:.|...|  |:..:.|..||..:...|||...||||:|.|.|.||||..|::|.||. .:
  Fly   312 VATAPQANKQSGEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHAL 376

  Rat   401 ERTADGRPQEVGRVYIYL-----QHPEGIEPTPSLTLTGQDEFGRFGSSLTPLGDLDQDGYNDVA 460
            |.:.|.     |.:|:::     .....|..:|..|:      .|||::|:.|||::.|||||||
  Fly   377 EDSHDN-----GAIYVFINKGFFNFERQILRSPVETM------ARFGTALSRLGDINHDGYNDVA 430

  Rat   461 IGAPFGGEAQQGVVFIFPGGPGGLNTKPSQVL-----QPLWAAGHTPDFFGSALRGGRDLDGNGY 520
            :||||.|   .|.|||:.|...||..:|||.|     ||.....|   .||..|..|.|:||||:
  Fly   431 VGAPFAG---NGTVFIYLGSENGLRDQPSQRLDAPSQQPSKYGSH---MFGHGLSRGSDIDGNGF 489

  Rat   521 PDLIVGSFGVDKALVYRGRPIISASASLTIFPSMFNPEERSCSLEGNPVSCINLSFCLNASGKHV 585
            .|..:|:...:...:||..|::...|::........||:....:    .:|..||  ..::.|.|
  Fly   490 NDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREIKPEQEKVKI----TACYRLS--TTSTDKLV 548

  Rat   586 PNSIGFEVELQLDWQKQKGGVRRALFLASKQATLTQT------LLIQNGAREDCREMKIYLRNES 644
                          |:|:..:|.|:....|:...|||      ..:.....|.||:.:..:|...
  Fly   549 --------------QEQELAIRIAMDKQLKRVKFTQTQTNEISFKVNANFGEQCRDFETQVRYSE 599

  Rat   645 EFRDKLSPIHIALNFSLDPKAPMDSHGLRPVLHYQSKSRIEDKAQILL---DCGEDNICVPDLQL 706
              :|..:||.:.:::.|..|.| ||............:..:...|.::   .|..| :|..||||
  Fly   600 --KDIFTPIDLEMHYELTKKVP-DSEEFCETCAIVDPTEPKVSTQNIIFSTGCATD-VCTADLQL 660

  Rat   707 AVYGEKKHVYLGDKNALNLTFLAQNLGEGGAYEAELRVTAPLEAEYSGLVRHPGNFSSLSCDYFA 771
            ..........||..:.|.|.:...|:|| .||..:..||:.....::.:   |||...:.    |
  Fly   661 RSKDVSPTYILGSADTLRLNYEITNIGE-TAYLPQFNVTSTSRLAFAQV---PGNCKVVD----A 717

  Rat   772 VNQSRQLVCDL--GNPMKAGTSIWGGLRFTVPHLQDTKK-TIQFDFQILS--------------- 818
            |     :||||  |.|:..|               ||.. ||.||...||               
  Fly   718 V-----MVCDLNRGRPLAKG---------------DTDSVTISFDVSQLSGQSLIIHAEVFSTGY 762

  Rat   819 --KNLNNSQSNMVSFPLSVEAQA-------QVSLNGVSKPEAVIFPVSDWNPQDQPQKEGDLGPA 874
              ...:|.|:|::......|..|       |:.|...|....::                     
  Fly   763 EQNPTDNRQTNVIGLKEFTEIDASGGQTNSQIDLEHYSNSAEIV--------------------- 806

  Rat   875 VHHVYELINQGPSSISQGVLEISCPQALE---GQQLLYVTKVTGLNNCTSN---------YTPNS 927
              :.||:.:.|||.|.|..:....|.|.:   ...::.:..||.|....|.         |..|:
  Fly   807 --NNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLYDQNN 869

  Rat   928 QGLELDP-------------------------EVSPHHLQ------------------------- 942
            ..|.:||                         ..|.|..|                         
  Fly   870 TMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTMEVLDTSMVATASMSRKRRDLKAL 934

  Rat   943 --RREAPGRSSTTSGTQVL------KCPEAKCFRLRCEFGPLHRQESRSLQLHFRVWAKTFLQQE 999
              .||...|.|......:|      |.|..:.....|....:.......:::|||......|...
  Fly   935 TANREQYARISNVKAHDLLSDDFKGKLPVNRTIVFNCRDPEMTICVRAEMRVHFRPEKSINLNMR 999

  Rat  1000 YQPFSLQCEALYEALKMP--YQILPRQLPQKKLQVATAVQWT----------KAEGSNGVPLWII 1052
            |   |:....:...|..|  |.::...|..:|....|:..::          ......|:|:|||
  Fly  1000 Y---SVDLNEVNAILVDPWEYFVILTDLKLQKKGDPTSTSFSINRRIEPNIISKHQETGLPIWII 1061

  Rat  1053 ILAILFGLLLLGLLIYVLYKLGFFKRS 1079
            |::::.|||||..:.|:|||.|||.|:
  Fly  1062 IVSVIGGLLLLSAISYLLYKFGFFNRT 1088

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Itga5NP_001101588.1 Int_alpha 108..166 CDD:214549 18/70 (26%)
Int_alpha 317..>359 CDD:214549 15/45 (33%)
Int_alpha 371..432 CDD:214549 21/66 (32%)
Int_alpha 438..492 CDD:214549 29/53 (55%)
Int_alpha 504..556 CDD:214549 15/51 (29%)
Integrin_alpha2 539..971 CDD:285619 104/537 (19%)
scbNP_523750.2 Int_alpha 51..103 CDD:214549 18/58 (31%)
FG-GAP 350..388 CDD:280083 18/42 (43%)
Int_alpha 409..459 CDD:214549 29/52 (56%)
Int_alpha 473..>515 CDD:214549 14/41 (34%)
Integrin_alpha2 507..829 CDD:285619 83/396 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335749
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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