Sequence 1: | NP_001101588.1 | Gene: | Itga5 / 315346 | RGDID: | 2925 | Length: | 1099 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_523750.2 | Gene: | scb / 36692 | FlyBaseID: | FBgn0286785 | Length: | 1115 | Species: | Drosophila melanogaster |
Alignment Length: | 1197 | Identity: | 296/1197 - (24%) |
---|---|---|---|
Similarity: | 452/1197 - (37%) | Gaps: | 316/1197 - (26%) |
- Green bases have known domain annotations that are detailed below.
Rat 78 LPLLLLLWPPPLQVGGFNLDAEAPAVLSGPP----------GSLFGFSVEFYRPGRDGVSVLVGA 132
Rat 133 PKANT---SQPGVLQGGAVYVCPWGTSPIQCSTIQFDSKGSRILESSLYSEEPVEYKSLQWFGAT 194
Rat 195 V---RAHGSSILACAPLYSWRTEKDPQNDPVGTCY------LST-ENFTRILEYAPCR------- 242
Rat 243 -SDFGSAAGQGYCQG--GFSAEFTKTG-RVVLGGPGSYFWQGQIL-----------SATQEQIS- 291
Rat 292 ----------------ESYYPQYLINPVQGQLQTRQASSVYDDSYLGYSVAVGEFSGDDTED--F 338
Rat 339 VAGVPKGNLTYG--YVTVLNGSDIHSLYNVSGEQMASYFGYAVAATDTNGDGLDDLLVGAPL-LM 400
Rat 401 ERTADGRPQEVGRVYIYL-----QHPEGIEPTPSLTLTGQDEFGRFGSSLTPLGDLDQDGYNDVA 460
Rat 461 IGAPFGGEAQQGVVFIFPGGPGGLNTKPSQVL-----QPLWAAGHTPDFFGSALRGGRDLDGNGY 520
Rat 521 PDLIVGSFGVDKALVYRGRPIISASASLTIFPSMFNPEERSCSLEGNPVSCINLSFCLNASGKHV 585
Rat 586 PNSIGFEVELQLDWQKQKGGVRRALFLASKQATLTQT------LLIQNGAREDCREMKIYLRNES 644
Rat 645 EFRDKLSPIHIALNFSLDPKAPMDSHGLRPVLHYQSKSRIEDKAQILL---DCGEDNICVPDLQL 706
Rat 707 AVYGEKKHVYLGDKNALNLTFLAQNLGEGGAYEAELRVTAPLEAEYSGLVRHPGNFSSLSCDYFA 771
Rat 772 VNQSRQLVCDL--GNPMKAGTSIWGGLRFTVPHLQDTKK-TIQFDFQILS--------------- 818
Rat 819 --KNLNNSQSNMVSFPLSVEAQA-------QVSLNGVSKPEAVIFPVSDWNPQDQPQKEGDLGPA 874
Rat 875 VHHVYELINQGPSSISQGVLEISCPQALE---GQQLLYVTKVTGLNNCTSN---------YTPNS 927
Rat 928 QGLELDP-------------------------EVSPHHLQ------------------------- 942
Rat 943 --RREAPGRSSTTSGTQVL------KCPEAKCFRLRCEFGPLHRQESRSLQLHFRVWAKTFLQQE 999
Rat 1000 YQPFSLQCEALYEALKMP--YQILPRQLPQKKLQVATAVQWT----------KAEGSNGVPLWII 1052
Rat 1053 ILAILFGLLLLGLLIYVLYKLGFFKRS 1079 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Itga5 | NP_001101588.1 | Int_alpha | 108..166 | CDD:214549 | 18/70 (26%) |
Int_alpha | 317..>359 | CDD:214549 | 15/45 (33%) | ||
Int_alpha | 371..432 | CDD:214549 | 21/66 (32%) | ||
Int_alpha | 438..492 | CDD:214549 | 29/53 (55%) | ||
Int_alpha | 504..556 | CDD:214549 | 15/51 (29%) | ||
Integrin_alpha2 | 539..971 | CDD:285619 | 104/537 (19%) | ||
scb | NP_523750.2 | Int_alpha | 51..103 | CDD:214549 | 18/58 (31%) |
FG-GAP | 350..388 | CDD:280083 | 18/42 (43%) | ||
Int_alpha | 409..459 | CDD:214549 | 29/52 (56%) | ||
Int_alpha | 473..>515 | CDD:214549 | 14/41 (34%) | ||
Integrin_alpha2 | 507..829 | CDD:285619 | 83/396 (21%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166335749 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.840 |