DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5966 and Lipc

DIOPT Version :9

Sequence 1:NP_572286.1 Gene:CG5966 / 31532 FlyBaseID:FBgn0029831 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_006243421.1 Gene:Lipc / 24538 RGDID:3009 Length:510 Species:Rattus norvegicus


Alignment Length:506 Identity:134/506 - (26%)
Similarity:209/506 - (41%) Gaps:128/506 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 RRALDQPK-----YLDLND----------PESVQGMGMNPKGKIFLLVHGY--LESGEI------ 126
            |:.|.:|:     :.|.:|          ||::|..|.|....:.:::||:  .||..:      
  Rat    41 RKPLQKPEIRFLLFKDESDRLGCQLRPQHPETLQECGFNSSHPLVMIIHGWSGSESATVGKDSDN 105

  Fly   127 ---------PWMWDMAKALLAHEPEGRASVVLIDWGGGASPPYVQAVANIRLVGAITAHVVHMLY 182
                     .|:|.:..||.:.:.: ..:|.|:||...|...|..||.|.|:||...|.::..|.
  Rat   106 DSQVDGLLETWIWKIVGALKSRQSQ-PVNVGLVDWISLAYQHYAIAVRNTRVVGQEVAALLLWLE 169

  Fly   183 EELRLPNLDNVHIIGHSLGAHLSGYAGYHLQHDFGLKPARITGLDPAAPLFTDTDPIVRLDKTDA 247
            |.::. :...||:||:|||||:||:||..:...  .|..||||||||.|:|..|.|..||...||
  Rat   170 ESMKF-SRSKVHLIGYSLGAHVSGFAGSSMGGK--RKIGRITGLDPAGPMFEGTSPNERLSPDDA 231

  Fly   248 HFVDIVHTDANPLMKGGLGINMRLGHVDFFPNGGFDNPGCN--KKFQDVVKKKTLFLTMQEFLGC 310
            :|||.:||.....|...:||...:.|.||:||||...|||:  :.::.:.:.....:|  :.:.|
  Rat   232 NFVDAIHTFTREHMGLSVGIKQPIAHYDFYPNGGSFQPGCHFLELYKHIAEHGLNAIT--QTIKC 294

  Fly   311 NHIRSQQYFTESI-GSQCPFLGITCDSFESFKDTKCTSCEEPGHTCLRMGYHSQEDYQEQVDLGQ 374
            .|.||...|.:|: .|.....|..|.:.:||....|.:|::  ..|..:||..:.|...:     
  Rat   295 AHERSVHLFIDSLQHSNLQNTGFQCSNMDSFSQGLCLNCKK--GRCNSLGYDIRRDRPRK----- 352

  Fly   375 LQQGDSPGVFYLWTGDSKPFCRLHYRITVRVSGHDES--------TLHG------------GEVG 419
                  ....:|.|....||...||:..::.....|.        ||.|            || |
  Rat   353 ------SKTLFLITRAQSPFKVYHYQFKIQFINQMEKPIEPTFTMTLLGTKEEIKKIPITLGE-G 410

  Fly   420 ILSIQLHDALV---KKAGKNERAATEMMKFSQKAMYFEPGYEYKALVAGRNL-----------RE 470
            |.|.:.:..|:   |..|:     ..|:||.         :|..|:.|  |:           .|
  Rat   411 ITSNKTYSLLITLDKDIGE-----LIMLKFK---------WENSAVWA--NVWNTVQTIMLWDTE 459

  Fly   471 PEYATVNWEYPTNILNPLTWRILSAPRIYLEYILIEAMESSDLYLKLCPQH 521
            |.||                      .:.|:.|.::|.|:.. .:..||.:
  Rat   460 PHYA----------------------GLILKTIWVKAGETQQ-RMTFCPDN 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5966NP_572286.1 Lipase 46..394 CDD:278576 101/343 (29%)
Pancreat_lipase_like 76..390 CDD:238363 101/339 (30%)
LipcXP_006243421.1 Lipase 18..366 CDD:278576 101/343 (29%)
Pancreat_lipase_like 47..362 CDD:238363 99/333 (30%)
PLAT_LPL 369..504 CDD:238856 31/159 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D247005at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11610
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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