back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG6048 and St14

DIOPT Version :9

Sequence 1:	NP_572282.1	Gene:	CG6048 / 31528	FlyBaseID:	FBgn0029827	Length:	362	Species:	Drosophila melanogaster
Sequence 2:	NP_446087.1	Gene:	St14 / 114093	RGDID:	69288	Length:	855	Species:	Rattus norvegicus

Alignment Length:	274	Identity:	101/274 - (36%)
Similarity:	137/274 - (50%)	Gaps:	44/274 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly    40 NADPG--------RIINGTEASLGATRHQVGIRKALNDGYFFGTGHLCGGSLIRPGWVLTAAHCF 96
            |.|.|        |::.||.|..|....||.:       :..|.|||||.|||.|.|:::|||||
  Rat   601 NCDCGLRSFTKQARVVGGTNADEGEWPWQVSL-------HALGQGHLCGASLISPDWLVSAAHCF 658

  Fly    97 VDQIIY---DGTFVPKEEFIVVMGNLDRYNRTNTLTFTIEE----RIMQLDKFDLSTYDKDIALL 154
            .|:.|:   |.|.     :...:|.||:..|:.:   .::|    ||:....|:..|:|.|||||
  Rat   659 QDETIFKYSDHTM-----WTAFLGLLDQSKRSAS---GVQEHKLKRIITHPSFNDFTFDYDIALL 715

  Fly   155 MLNGTVPTGHPT-IRPIAL--NRFAIPEGVVCQVTGWGNTEDGYVSD-ILMTVDVPMISEEHCIN 215
            .|.  .|..:.| :|||.|  |....|.|....|||||:|::|.... ||...::.:|::..|
  Rat   716 ELE--KPAEYSTVVRPICLPDNTHVFPAGKAIWVTGWGHTKEGGTGALILQKGEIRVINQTTC-- 776

  Fly   216 DSDLGHLIQPGMICAGYLEVGEKDACAGDSGGPLVCQSE-----LAGVVSWGIQCALPRLPGVYT 275
            :..|...|.|.|:|.|:|. |..|:|.|||||||....:     .|||||||..||....|||||
  Rat   777 EELLPQQITPRMMCVGFLS-GGVDSCQGDSGGPLSSVEKDGRIFQAGVVSWGEGCAQRNKPGVYT 840

  Fly   276 EVSYYYDWILQNMG 289
            .:....|||.:..|
  Rat   841 RIPEVRDWIKEQTG 854

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.