DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6041 and St14

DIOPT Version :10

Sequence 1:NP_572281.1 Gene:CG6041 / 31527 FlyBaseID:FBgn0029826 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_446087.1 Gene:St14 / 114093 RGDID:69288 Length:855 Species:Rattus norvegicus


Alignment Length:254 Identity:83/254 - (32%)
Similarity:130/254 - (51%) Gaps:26/254 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 EPKIVGGYDASIEQVSYQVSIRLTANDKKSYGSGHLCGGVVISQRLVATAAHCCYITDKKKYRTA 96
            :.::|||.:|...:..:|||:.       :.|.|||||..:||...:.:||||.......||...
  Rat   612 QARVVGGTNADEGEWPWQVSLH-------ALGQGHLCGASLISPDWLVSAAHCFQDETIFKYSDH 669

  Fly    97 GEFVLVMGSTYLTSSTDRTLM----YYLQQLITHENYNPDALTNDIALMFINGYIPWNWPTVT-- 155
            ..:...:|   |...:.|:..    :.|:::|||.::|......||||:.:..  |..:.||.  
  Rat   670 TMWTAFLG---LLDQSKRSASGVQEHKLKRIITHPSFNDFTFDYDIALLELEK--PAEYSTVVRP 729

  Fly   156 -ALALNSQLVATNTDCLISGWGLLQQNGTFSSNTLQAATVPIVSYTTC-RISYNSIPVSQVCAGY 218
             .|..|:.:........::|||..::.|| .:..||...:.:::.||| .:....|....:|.|:
  Rat   730 ICLPDNTHVFPAGKAIWVTGWGHTKEGGT-GALILQKGEIRVINQTTCEELLPQQITPRMMCVGF 793

  Fly   219 LSGGVDACQGDSGGPMSC---NGML--AGIVSYGAGCAAPGYPGVYTNVSYYYDWIVQK 272
            ||||||:||||||||:|.   :|.:  ||:||:|.|||....|||||.:....|||.::
  Rat   794 LSGGVDSCQGDSGGPLSSVEKDGRIFQAGVVSWGEGCAQRNKPGVYTRIPEVRDWIKEQ 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6041NP_572281.1 Tryp_SPc 34..269 CDD:214473 81/247 (33%)
St14NP_446087.1 SEA 88..178 CDD:460188
CUB 214..332 CDD:238001
CUB 340..444 CDD:238001
LDLa 454..486 CDD:238060
LDLa 492..523 CDD:238060
LDLa 525..559 CDD:238060
LDLa 567..602 CDD:238060
Tryp_SPc 615..852 CDD:238113 83/249 (33%)
Blue background indicates that the domain is not in the aligned region.

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