DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shmt and SHM1

DIOPT Version :10

Sequence 1:NP_572278.1 Gene:Shmt / 31524 FlyBaseID:FBgn0029823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_009822.4 Gene:SHM1 / 852565 SGDID:S000000467 Length:490 Species:Saccharomyces cerevisiae


Alignment Length:470 Identity:242/470 - (51%)
Similarity:331/470 - (70%) Gaps:17/470 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 QKLLQTPLAQGDPELAELIKKEKERQREGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYY 138
            |.|:..|:::||||:.:::::|:.||:..:.:|.||||||.||::.|.|.|.|||||||||:|||
Yeast    26 QSLVSKPVSEGDPEMFDILQQERHRQKHSITLIPSENFTSKAVMDLLGSELQNKYSEGYPGERYY 90

  Fly   139 GGNEYIDRIELLAQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPDGGH 203
            ||||.||:.|.|.|.|..||:.||..||||||||.||:||||.||:.:....:|:||||||||||
Yeast    91 GGNEIIDKSESLCQARALELYGLDPAKWGVNVQPLSGAPANLYVYSAIMNVGERLMGLDLPDGGH 155

  Fly   204 LTHGF----FTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRPQIIIAGISCYSRLL 264
            |:||:    .||   ||..|.:|:||||.|:..||:||||.|...||.|||::|:||.|.||||:
Yeast   156 LSHGYQLKSGTP---ISFISKYFQSMPYHVDHTTGLIDYDNLQVLAKAFRPKVIVAGTSAYSRLI 217

  Fly   265 DYARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPFEWADIVTTTTHKTLRGPRAGVIFFRKGVR 329
            |||||::|....|||||:||||::|:|||.::|||||.:|||||||||:|||||..:||||||::
Yeast   218 DYARFKEISQGCGAYLMSDMAHISGLVAANVVPSPFEHSDIVTTTTHKSLRGPRGAMIFFRKGIK 282

  Fly   330 STKANGDKVLYDLEERINQAVFPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCD 394
            |....|.::.|:||::||.:|||..||||||:.:..:|.|.|||.|||||.||.:::.|:|....
Yeast   283 SVTKKGKEIPYELEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQ 347

  Fly   395 GLISRGYQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAMNPSGIRLGT 459
            .|...||::.:||||.||:::|:....:.||:.|.||..:.||.||||:||||||:.|||:|:||
Yeast   348 ELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGT 412

  Fly   460 PALTTRGLAEQDIEQVVAFIDAALKVGVQ------AAKLAGSPKITDYHKTLAENVELKAQVDEI 518
            ||:||||...::..||..:||:|:|:...      ..||....::.::.|...|:.|:.|...||
Yeast   413 PAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEI 477

  Fly   519 RKNVAQFSRKFPLPG 533
            .|.|.|    :|:||
Yeast   478 SKWVGQ----YPVPG 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShmtNP_572278.1 PLN03226 79..536 CDD:215639 240/465 (52%)
SHM1NP_009822.4 SHMT 33..432 CDD:395372 221/401 (55%)

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