DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shmt and SHM1

DIOPT Version :9

Sequence 1:NP_572278.1 Gene:Shmt / 31524 FlyBaseID:FBgn0029823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_195506.1 Gene:SHM1 / 829949 AraportID:AT4G37930 Length:517 Species:Arabidopsis thaliana


Alignment Length:507 Identity:265/507 - (52%)
Similarity:359/507 - (70%) Gaps:12/507 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 ALTRIAAKKQPSPTPFLPAIRRYSDSKQSTLKNMADQ---------KLLQTPLAQGDPELAELIK 93
            ||.|:::.   ...|..|.||..|....|......|:         |.|..||.:.|||:|::|:
plant     6 ALRRLSSS---IDKPIRPLIRSTSCYMSSLPSEAVDEKERSRVTWPKQLNAPLEEVDPEIADIIE 67

  Fly    94 KEKERQREGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELLAQQRGREL 158
            .||.||.:|||:|.|||||||:|::::.|.:||||||||||.||||||||||..|.|.|:|..|.
plant    68 HEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEA 132

  Fly   159 FNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPDGGHLTHGFFTPTKKISATSIFFE 223
            |.||.|||||||||.||||||..|||.:.:||:|||.||||.||||:||:.|.||||||.|||||
plant   133 FRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFE 197

  Fly   224 SMPYKVNPETGIIDYDKLAEAAKNFRPQIIIAGISCYSRLLDYARFRQICDDVGAYLMADMAHVA 288
            :|||:::..||.||||::.::|..|||::|:||.|.|:||.||||.|::|:...|.::|||||::
plant   198 TMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHIS 262

  Fly   289 GIVAAGLIPSPFEWADIVTTTTHKTLRGPRAGVIFFRKGVRSTKANGDKVLYDLEERINQAVFPS 353
            |:|||.:|||||::||:|||||||:|||||..:|||||||:.....|.:||||.|::|||||||.
plant   263 GLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDFEDKINQAVFPG 327

  Fly   354 LQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRGYQVATGGTDVHLVLVDVR 418
            |||||||:.:.|:|.|.|||.:.|:||||.|||.|:......|:.|||::.:||||.|||||:::
plant   328 LQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLK 392

  Fly   419 KAGLTGAKAEYILEEVGIACNKNTVPGDKSAMNPSGIRLGTPALTTRGLAEQDIEQVVAFIDAAL 483
            ..|:.|::.|.:||.|.||.||||||||.|||.|.|||:||||||:||..|:|..:|..:.|.|:
plant   393 PKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAV 457

  Fly   484 KVGVQAAKLAGSPKITDYHKTLAENVELKAQVDEIRKNVAQFSRKFPLPGLE 535
            .:.::....|...|:.|:...:..:..:::::.::|..|.:|:::||..|.|
plant   458 TIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFE 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShmtNP_572278.1 PLN03226 79..536 CDD:215639 253/457 (55%)
SHMT 82..493 CDD:99733 241/410 (59%)
SHM1NP_195506.1 PLN03226 41..517 CDD:215639 255/469 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 509 1.000 Domainoid score I68
eggNOG 1 0.900 - - E1_COG0112
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 545 1.000 Inparanoid score I260
OMA 1 1.010 - - QHG60631
OrthoDB 1 1.010 - - D372408at2759
OrthoFinder 1 1.000 - - FOG0000859
OrthoInspector 1 1.000 - - otm2791
orthoMCL 1 0.900 - - OOG6_100262
Panther 1 1.100 - - O PTHR11680
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X557
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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